View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0638_low_7 (Length: 345)

Name: NF0638_low_7
Description: NF0638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0638_low_7
NF0638_low_7
[»] chr3 (2 HSPs)
chr3 (29-344)||(9276776-9277091)
chr3 (203-235)||(25204151-25204183)
[»] chr4 (2 HSPs)
chr4 (201-235)||(22016068-22016102)
chr4 (196-232)||(4790780-4790816)
[»] chr8 (1 HSPs)
chr8 (201-237)||(34489299-34489335)
[»] chr1 (3 HSPs)
chr1 (200-235)||(47126338-47126373)
chr1 (190-222)||(10212573-10212605)
chr1 (187-227)||(30035255-30035295)
[»] chr6 (2 HSPs)
chr6 (190-230)||(22993372-22993412)
chr6 (190-230)||(23794986-23795026)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 29 - 344
Target Start/End: Original strand, 9276776 - 9277091
Alignment:
Q  29 aaaatggagatggtactttctccctatctttctttttccatgtttggtgtgaagttgctggtttgatgatatgagctatgaagcaccgacacagacacta 128  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9276776 aaaatggagatggtactttctctctatctttctttttccatgtttggtgtgaagttgctggtttgatgatatgagctatgaagcaccgacacagacactg 9276875  T
Q  129 atactaatgtcataaaatggtgtaattgaatataaccatgtgtgtcagtgtcatttcggtattggataccgaacacaccttcaatctaaagtgtcggtgc 228  Q
    |||||||||||| |||||||| ||||||||||||||||  ||||| |||||||||| |||||| ||||| |||||  |||||||||| ||||||| ||||    
T  9276876 atactaatgtcagaaaatggtataattgaatataaccacatgtgttagtgtcatttaggtatttgatactgaacatgccttcaatctgaagtgtcagtgc 9276975  T
Q  229 tacataggatatgagagggaaattagtgcatttcatgcatgtttggttgttctaacattctaaatttccttatcagatgcaaattaaaatataagcaagt 328  Q
    |||||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  9276976 tacatacgatataagagggaaatgagtgtatttcatgcatgtttggttgttctaacattctaaattttcttatcagatgcaaattcaaatataagcaagt 9277075  T
Q  329 cttctattgttactaa 344  Q
    ||||||||||||||||    
T  9277076 cttctattgttactaa 9277091  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 25204183 - 25204151
Alignment:
Q  203 acaccttcaatctaaagtgtcggtgctacatag 235  Q
    |||| ||||||||||||||||||||||||||||    
T  25204183 acacattcaatctaaagtgtcggtgctacatag 25204151  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 22016068 - 22016102
Alignment:
Q  201 acacaccttcaatctaaagtgtcggtgctacatag 235  Q
    |||||||||||||||||||||||||||||||||||    
T  22016068 acacaccttcaatctaaagtgtcggtgctacatag 22016102  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 4790780 - 4790816
Alignment:
Q  196 accgaacacaccttcaatctaaagtgtcggtgctaca 232  Q
    |||||||||||||||||||  ||||||||||||||||    
T  4790780 accgaacacaccttcaatcagaagtgtcggtgctaca 4790816  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 34489299 - 34489335
Alignment:
Q  201 acacaccttcaatctaaagtgtcggtgctacatagga 237  Q
    |||||||||||||||||||||||||||||||| ||||    
T  34489299 acacaccttcaatctaaagtgtcggtgctacaaagga 34489335  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 47126338 - 47126373
Alignment:
Q  200 aacacaccttcaatctaaagtgtcggtgctacatag 235  Q
    |||||||||||||||||||||||||||| |||||||    
T  47126338 aacacaccttcaatctaaagtgtcggtgatacatag 47126373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 10212605 - 10212573
Alignment:
Q  190 ttggataccgaacacaccttcaatctaaagtgt 222  Q
    ||||||||||||||||||||| |||||||||||    
T  10212605 ttggataccgaacacaccttccatctaaagtgt 10212573  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 30035295 - 30035255
Alignment:
Q  187 gtattggataccgaacacaccttcaatctaaagtgtcggtg 227  Q
    |||||||| ||||||||||| ||||||| ||||||||||||    
T  30035295 gtattggacaccgaacacacattcaatcaaaagtgtcggtg 30035255  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 22993412 - 22993372
Alignment:
Q  190 ttggataccgaacacaccttcaatctaaagtgtcggtgcta 230  Q
    ||||||||| |||||||||||||| | ||||||||||||||    
T  22993412 ttggataccaaacacaccttcaatttcaagtgtcggtgcta 22993372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 23794986 - 23795026
Alignment:
Q  190 ttggataccgaacacaccttcaatctaaagtgtcggtgcta 230  Q
    ||||||||| |||||||||||||| | ||||||||||||||    
T  23794986 ttggataccaaacacaccttcaatttcaagtgtcggtgcta 23795026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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