View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0638_low_9 (Length: 321)
Name: NF0638_low_9
Description: NF0638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0638_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 9277061 - 9277373
Alignment:
| Q |
1 |
caaatataagcaagtcgtctattgttactagcagtggtaacaagagtggttcaaaacctataaggaagaaaaggcacattgcttcagcatctacagcatt |
100 |
Q |
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|||||||||||||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
9277061 |
caaatataagcaagtcttctattgttactaatagtagtaacaagagtgagtcaaaacctataaggaagaagaggcacattgcttcagcatcaacagcatt |
9277160 |
T |
|
| Q |
101 |
acttttcggcacagtccttggccttattcaagctgcaacccttatatttgcagctaaacctctattaggtgcaatgggtttaaaatatgtatgtatcttt |
200 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9277161 |
actttttggcacagttcttggccttattcaagctgcaacccttatatttgcagctaaacctctattaggtgcaatgggtttaaaatatgtatgtatcttt |
9277260 |
T |
|
| Q |
201 |
actatcataagtactatattcaatatcttattacttcattgcttaaactacattgaatataagcttttgttaaattgagatatttatcnnnnnnngtagg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9277261 |
actatcataagtactatattcaatatcttattacttcattgcttaaactacattgaatataagcttttgttaaattgagatatttatctttttttgtagg |
9277360 |
T |
|
| Q |
301 |
attctcctatgct |
313 |
Q |
| |
|
||||||||||||| |
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| T |
9277361 |
attctcctatgct |
9277373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 13749570 - 13749694
Alignment:
| Q |
66 |
aagaaaaggcacattgcttcagcatctacagcattacttttcggcacagtccttggccttattcaagctgcaacccttatatttgcagctaaacctctat |
165 |
Q |
| |
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||||| || ||||||||||||||||| |||||| | |||||||||||| | |||||||| |||||| || ||| |||||||||| |||||||| ||||| |
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| T |
13749570 |
aagaagagacacattgcttcagcatcaacagcactccttttcggcacaatgcttggcctaattcaaactacaatacttatatttggagctaaacttctat |
13749669 |
T |
|
| Q |
166 |
taggtgcaatgggtttaaaatatgt |
190 |
Q |
| |
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||| ||| |||||| ||||| |||| |
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| T |
13749670 |
tagctgccatgggtataaaacatgt |
13749694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 13630825 - 13630927
Alignment:
| Q |
65 |
gaagaaaaggcacattgcttcagcatctacagcattacttttcggcacagtccttggccttattcaagctgcaacccttatatttgcagctaaacctcta |
164 |
Q |
| |
|
|||||| || ||||||||||| ||||| |||||| |||| || ||| || | ||||| || | |||||| || ||||||||||| ||||||||||||| |
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| T |
13630825 |
gaagaagagacacattgcttctgcatcaacagcactactctttggctcaattcttggtctcctacaagcttcagtccttatatttggagctaaacctcta |
13630924 |
T |
|
| Q |
165 |
tta |
167 |
Q |
| |
|
||| |
|
|
| T |
13630925 |
tta |
13630927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 13731237 - 13731339
Alignment:
| Q |
65 |
gaagaaaaggcacattgcttcagcatctacagcattacttttcggcacagtccttggccttattcaagctgcaacccttatatttgcagctaaacctcta |
164 |
Q |
| |
|
|||||| || ||||||||||| ||||| |||||| |||| || ||| || | ||||| || | |||||| || ||||||||||| ||||||||||||| |
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|
| T |
13731237 |
gaagaagagacacattgcttctgcatcaacagcactactctttggctcaattcttggtctcctacaagcttcagtccttatatttggagctaaacctcta |
13731336 |
T |
|
| Q |
165 |
tta |
167 |
Q |
| |
|
||| |
|
|
| T |
13731337 |
tta |
13731339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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