View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0639_high_1 (Length: 484)
Name: NF0639_high_1
Description: NF0639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0639_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 48258285 - 48257858
Alignment:
| Q |
1 |
ttcaatgaagctccttatgtttctgaacccaagtccaccatcatatatatacttggacctaaacaaattatcttatttcctccgatgaattttccttttg |
100 |
Q |
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| T |
48258285 |
ttcaatgaagctccttatgtttctgaacccaagtccaccatcatatata--cttggacctaaacaaattatcttatttcctccgatgaattttccttttg |
48258188 |
T |
|
| Q |
101 |
ttatatgttcctccccaccaaaacctacatatagattgtttaattctatcacaaattccctcgaggaatcaaaaagcaacttataacataggtaggaata |
200 |
Q |
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| T |
48258187 |
ttatatgttcctccccaccaaaacctacatatagattgtttaattctatcacaaattccctcgaggaatcaaaaagcaacttataacataggtaggaata |
48258088 |
T |
|
| Q |
201 |
tcttggaacgttgtcctgattaaaacagccatactagagaaggataaatgtttttcctttcaccctctcaacttgcttcttatcatttccatgaggaaat |
300 |
Q |
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| T |
48258087 |
tcttggaacgttgtcctgattaaaacagccatactagagaaggataaatgtttttcctttcaccctctcaacttgcttcttatcatttcca--------- |
48257997 |
T |
|
| Q |
301 |
tgaaaactatgttcttagaatgacatatatgggtaggtgatcataaatactttgctatgttgtcagaatctgaataggcatgtgtaattgaaagttgttc |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
48257996 |
tgaaaactttgttcttagaatgacatatatgggtaggtgatcataaatactttgctatgttgtcagaatctgaataagcatgtttaattgaaagttgttc |
48257897 |
T |
|
| Q |
401 |
aagttgcttaaaacttatagcttatcatttttcatctca |
439 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
48257896 |
aagttgcttaaaacttatagcttatcatttttcatctca |
48257858 |
T |
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