View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0639_high_2 (Length: 325)

Name: NF0639_high_2
Description: NF0639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0639_high_2
NF0639_high_2
[»] chr4 (5 HSPs)
chr4 (1-158)||(37252989-37253146)
chr4 (1-158)||(37232743-37232897)
chr4 (34-116)||(37257156-37257238)
chr4 (34-85)||(37237700-37237751)
chr4 (111-155)||(37241994-37242038)
[»] scaffold0902 (1 HSPs)
scaffold0902 (106-155)||(3361-3410)
[»] scaffold1801 (1 HSPs)
scaffold1801 (106-155)||(127-176)
[»] scaffold1652 (1 HSPs)
scaffold1652 (116-155)||(462-501)
[»] chr6 (2 HSPs)
chr6 (116-155)||(14254119-14254158)
chr6 (113-155)||(14248312-14248354)
[»] scaffold1176 (1 HSPs)
scaffold1176 (106-155)||(1360-1409)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 37252989 - 37253146
Alignment:
Q  1 acggtaaatctgttcaaagcggcgccgttttcggaaggtccttcagaaggaggagtggagatggatgatggagtaagagcaggagagacagcgggagagt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37252989 acggtaaatctgttcaaagcggcaccgttttcggaaggtccttcggaaggaggagtggaaatggatgatggagtaagagcaggagagacagcgggagagt 37253088  T
Q  101 cggatgaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggagatgg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37253089 cggatgaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggagatgg 37253146  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 37232743 - 37232897
Alignment:
Q  1 acggtaaatctgttcaaagcggcgccgttttcggaaggtccttcagaaggaggagtggagatggatgatggagtaagagcaggagagacagcgggagagt 100  Q
    ||||| ||||| ||||||||||||||||||   || ||| |||||| ||||||||||||||| ||||||||||||| |||||||| | | ||||| ||      
T  37232743 acggtgaatctattcaaagcggcgccgttt---gatggtgcttcagcaggaggagtggagatcgatgatggagtaacagcaggagcggcggcgggtgaac 37232839  T
Q  101 cggatgaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggagatgg 158  Q
    | || ||||||||||||||||||||||||||||||||||| || || |||||||||||    
T  37232840 cagaggaagcaggaggaggagatggtggagagttgatggcggatggcgaaggagatgg 37232897  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 37257156 - 37257238
Alignment:
Q  34 gaaggtccttcagaaggaggagtggagatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggagg 116  Q
    |||||| |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||||||| || |||||||||||    
T  37257156 gaaggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggagg 37257238  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 37237700 - 37237751
Alignment:
Q  34 gaaggtccttcagaaggaggagtggagatggatgatggagtaagagcaggag 85  Q
    |||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  37237700 gaaggtgcttcagaaggaggagtagagatggatgatggagtaacagcaggag 37237751  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 37241994 - 37242038
Alignment:
Q  111 aggaggaggagatggtggagagttgatggctgaaggtgaaggaga 155  Q
    |||||||||||||||||||||||||||||| || |||||||||||    
T  37241994 aggaggaggagatggtggagagttgatggcggacggtgaaggaga 37242038  T

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Target: scaffold0902 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 3361 - 3410
Alignment:
Q  106 gaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggaga 155  Q
    |||||| |||||||||||||||||||||||||||| || |||||||||||    
T  3361 gaagcatgaggaggagatggtggagagttgatggcagacggtgaaggaga 3410  T

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Target: scaffold1801 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 176 - 127
Alignment:
Q  106 gaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggaga 155  Q
    |||||| ||||||||||| |||||||||||||||| || |||||||||||    
T  176 gaagcatgaggaggagattgtggagagttgatggcagacggtgaaggaga 127  T

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Target: scaffold1652 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 501 - 462
Alignment:
Q  116 gaggagatggtggagagttgatggctgaaggtgaaggaga 155  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  501 gaggagatggtggagagttgatggcagacggtgaaggaga 462  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 14254119 - 14254158
Alignment:
Q  116 gaggagatggtggagagttgatggctgaaggtgaaggaga 155  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  14254119 gaggagatggtggagagttgatggcagacggtgaaggaga 14254158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 14248312 - 14248354
Alignment:
Q  113 gaggaggagatggtggagagttgatggctgaaggtgaaggaga 155  Q
    |||||||||||| ||||||||||||||| || |||||||||||    
T  14248312 gaggaggagatgatggagagttgatggcagacggtgaaggaga 14248354  T

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Target: scaffold1176 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 1409 - 1360
Alignment:
Q  106 gaagcaggaggaggagatggtggagagttgatggctgaaggtgaaggaga 155  Q
    |||||| ||||||||||||||||| ||||||||||  | |||||||||||    
T  1409 gaagcatgaggaggagatggtggacagttgatggcacacggtgaaggaga 1360  T

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