View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0639_high_3 (Length: 303)
Name: NF0639_high_3
Description: NF0639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0639_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 11335263 - 11335140
Alignment:
| Q |
34 |
ggggtagtggcaatgaaattgttagcaaatgtaatgtgaatacatggatttttgcattgaaaataagcaattaagcattcgtcatttttcgtagccaaca |
133 |
Q |
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| T |
11335263 |
ggggtagtggcaatgaaattgttagcaaatataatgtgaatacatggatttatgcattgaaaataagcaattaagcattcgtcatttttcgtagccaaca |
11335164 |
T |
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| Q |
134 |
atcccgtaccattcagcattatcc |
157 |
Q |
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| T |
11335163 |
atcccgtaccattcaacattatcc |
11335140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 46865997 - 46866073
Alignment:
| Q |
158 |
ttttttatttgtttaatattgaaatgaatcaaacgactccattttatcaaaaacaaagattttaggtgcattgagct |
234 |
Q |
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| T |
46865997 |
ttttttatttgtttaatattgaaatgaatcaaacgactccattttatcaaaaacaaagattttaggtgcattgagct |
46866073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 11052824 - 11052746
Alignment:
| Q |
34 |
ggggtagtggcaatgaaattgttagcaaatgtaatgtgaatacatggatttttgcattgaaaataagcaattaagcatt |
112 |
Q |
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| T |
11052824 |
ggggttgtggcaatgaaattgttaacaaatataatgtgaatacatggatctatgcattaaaaatacgcaattaagcatt |
11052746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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