View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0639_low_10 (Length: 250)
Name: NF0639_low_10
Description: NF0639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0639_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 4134295 - 4134122
Alignment:
| Q |
73 |
ctcgattgtcatggtatatggtttgtgtgattgaaataaagaaagagatctgtttccattgacctctctttcctagtattgaatataattacgagcaaga |
172 |
Q |
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||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
4134295 |
ctcgattgtcatgatataggatttgtgtgattgaaataaagaaagagatctgtttccattgacctctctttcccagtattgaatataattatgagcaaga |
4134196 |
T |
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| Q |
173 |
tttgtttaccatnnnnnnncaatactagagcagattaaatcacaataaaagagttagagatcaccataggtttt |
246 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
4134195 |
tttgtttaccataaaaaaacaatactagagcagattaaatcacaatgaaagagttagagatcaccgtaggtttt |
4134122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 22212459 - 22212287
Alignment:
| Q |
73 |
ctcgattgtcatggtatatggtttgtgtgattgaaataaagaaagagatctgtttccattgacctctctttcctagtattgaatataattacgagcaaga |
172 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
22212459 |
ctcgattgtcatgatatatggtttgtgtgattgaaataaagaaagagatatgtttccattgacctctctttctcagtattgaatataattatgagcaaga |
22212360 |
T |
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| Q |
173 |
tttgtttaccatnnnnnnncaatactagagcagattaaatcacaataaaagagttagagatcaccataggtttt |
246 |
Q |
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| T |
22212359 |
tctgtttaccat-aaaaaacaatactagagcagattaaatcacaataaaagagttagagatcacaataggtttt |
22212287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 44886128 - 44886085
Alignment:
| Q |
102 |
attgaaataaagaaagagatctgtttccattgacctctctttcc |
145 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
44886128 |
attgaaacaaagaaagagatcattttccattgacctctctttcc |
44886085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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