View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0639_low_12 (Length: 241)

Name: NF0639_low_12
Description: NF0639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0639_low_12
NF0639_low_12
[»] chr3 (1 HSPs)
chr3 (3-73)||(50746282-50746352)


Alignment Details
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 50746282 - 50746352
Alignment:
Q  3 gaaccataagaaggaaagcgtttcaatattctccacgtcagattgagttacaggtggtgtgtttgtctgac 73  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50746282 gaacgataagaaggaaaacgtttcaatattctccacgtcagattgagttacaggtggtgtgtttgtctgac 50746352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University