View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0639_low_2 (Length: 382)
Name: NF0639_low_2
Description: NF0639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0639_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 29 - 370
Target Start/End: Complemental strand, 44736580 - 44736239
Alignment:
| Q |
29 |
atactagaagttgaactaggttataaaatgacatagaaagatatattaataatatttannnnnnnacaattaagataataagagtaaaactaagagaagt |
128 |
Q |
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| T |
44736580 |
atactagaagttgaactaggttataaaatgacatagaaagatatattaataatatatatttttttacaattaagataataagagtaaaactaagagaagt |
44736481 |
T |
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| Q |
129 |
aagctataaggtagtatttcaattagcttatcgaaaaagttaaagttagcaaaaataagttataagttcgagagaaaagaacagttattaaagaagactt |
228 |
Q |
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| T |
44736480 |
aagctataaggtagtatttcaattagcttatcaaaaaagttaaagttagcaaaaataagttataagttcgagagaaaagaacagttattaaagaagtctt |
44736381 |
T |
|
| Q |
229 |
ttttaatcatacgagtgttnnnnnnnttgttgaagtaacaataacctcaaaattacgaattgagccataaaaacacttaaagagtgatgagtcgttttaa |
328 |
Q |
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| T |
44736380 |
ttttaatcatacgagtgttaaaaaaattgttgaagtaacaataacctcaaaattacgaattgagccataaaaacaattaaagagtgatgagtcgttttaa |
44736281 |
T |
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| Q |
329 |
tctttgagaaaaactgcaatatccaatttagtttctaagaat |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
44736280 |
tctttgagaaaaactgcaatatccaatttagtttctaagaat |
44736239 |
T |
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