View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0639_low_6 (Length: 301)

Name: NF0639_low_6
Description: NF0639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0639_low_6
NF0639_low_6
[»] chr8 (3 HSPs)
chr8 (29-286)||(1409217-1409474)
chr8 (180-286)||(5981452-5981560)
chr8 (180-279)||(5981744-5981844)
[»] chr4 (4 HSPs)
chr4 (204-283)||(4469193-4469272)
chr4 (148-278)||(11307268-11307400)
chr4 (204-244)||(16559370-16559410)
chr4 (42-86)||(30551590-30551634)
[»] chr2 (2 HSPs)
chr2 (205-283)||(19548187-19548267)
chr2 (186-283)||(10066574-10066673)
[»] chr1 (2 HSPs)
chr1 (205-283)||(43834538-43834618)
chr1 (205-243)||(5822175-5822213)
[»] chr7 (1 HSPs)
chr7 (207-250)||(22562032-22562075)
[»] chr5 (1 HSPs)
chr5 (34-82)||(13097462-13097510)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 29 - 286
Target Start/End: Complemental strand, 1409474 - 1409217
Alignment:
Q  29 aaaacctaacttgtaactactttaaacaatgttaaaataattctaacaaatctcaaaccaactctaaccgagtgaagtgataaataggttgatggttcaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1409474 aaaacctaacttgtaactactttaaacaatgttaaaataattctaacaaatctcaaaccatctctaaccgagtgaagtgataaataggttgatggttcaa 1409375  T
Q  129 ttttcaatggaaatgaaagtgttggggagttcagggaacgctgggagaggtaatgggctaaatatccaggatcactaagagacttagacatcacattttc 228  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||    
T  1409374 ttttcaatggaaatgaaagtgttggggagttcagggaacgtcgggagaggtaatgggttaaatatccaggatcactaagaaacttagacaccacattttc 1409275  T
Q  229 atccaaaatcttaagacattagctatgggtcccctcccttatatatccaacattttct 286  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  1409274 atccaaaatcttaagaaattagctatggatcccctcccttatatatccaacattttct 1409217  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 5981452 - 5981560
Alignment:
Q  180 aatgggctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacattagct--atgggtcccctcccttatatatcca 277  Q
    |||||||||||  ||||| | || ||||||||||||||| ||||||| || |||||| |||||| ||| || |  |||||||||||| ||||||||||||    
T  5981452 aatgggctaaacgtccagaaccaataagagacttagacaccacatttccacccaaaaccttaaggcatcaggtacatgggtcccctctcttatatatcca 5981551  T
Q  278 acattttct 286  Q
    || ||||||    
T  5981552 acgttttct 5981560  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 5981744 - 5981844
Alignment:
Q  180 aatgggctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacattag-ctatgggtcccctcccttatatatccaa 278  Q
    |||||||||||  || |||| || ||||||||||||||| ||||| | || |||||| |||||| || | |  ||||||||||||| |||||||||||||    
T  5981744 aatgggctaaacttcaaggaccagtaagagacttagacaccacatctccacccaaaaccttaaggcaatggtttatgggtcccctctcttatatatccaa 5981843  T
Q  279 c 279  Q
    |    
T  5981844 c 5981844  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 4469272 - 4469193
Alignment:
Q  204 taagagacttagacatcacattttcatccaaaatcttaagacattagctatgggtcccctcccttatatatccaacattt 283  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||||   || |||||||| ||||||||| ||||||||    
T  4469272 taagagactcagacatcacattttcacccaaaaccttaagacattagacgtgtgtcccctctcttatatatacaacattt 4469193  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 11307268 - 11307400
Alignment:
Q  148 tgttggggagttcagggaacgctgggagaggtaatgggctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacat 247  Q
    |||||||||||  ||||| | ||||||| |  |||  ||||||| | ||||| |||||||||||||||||| ||||| | || ||||||  ||||| |||    
T  11307268 tgttggggagtctagggagcactgggagcgacaataagctaaatgttcaggaccactaagagacttagacaccacatctccacccaaaacattaaggcat 11307367  T
Q  248 tagctat--gggtcccctcccttatatatccaa 278  Q
     || |||  | |||||||| |||||||||||||    
T  11307368 caggtatacgtgtcccctctcttatatatccaa 11307400  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 16559410 - 16559370
Alignment:
Q  204 taagagacttagacatcacattttcatccaaaatcttaaga 244  Q
    ||||||||||||||| ||||| | |||||||||||||||||    
T  16559410 taagagacttagacaccacatctccatccaaaatcttaaga 16559370  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 30551590 - 30551634
Alignment:
Q  42 taactactttaaacaatgttaaaataattctaacaaatctcaaac 86  Q
    ||||||| ||||||||| || |||||||| |||||||||||||||    
T  30551590 taactaccttaaacaatattcaaataattttaacaaatctcaaac 30551634  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 19548267 - 19548187
Alignment:
Q  205 aagagacttagacatcacattttcatccaaaatcttaagacattagctat--gggtcccctcccttatatatccaacattt 283  Q
    |||||||||| ||| ||||| | || |||||| ||||||||||||| |||  ||||| |||| ||||||||||||||||||    
T  19548267 aagagacttatacaccacatctccacccaaaaccttaagacattagatatatgggtctcctctcttatatatccaacattt 19548187  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 10066673 - 10066574
Alignment:
Q  186 ctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacattag--ctatgggtcccctcccttatatatccaacattt 283  Q
    |||||| ||||||| |||||||||| ||| | | ||||| | || ||||||||||||| ||||||   ||||| || |||  ||||||||||||||||||    
T  10066673 ctaaatgtccaggaccactaagagatttatataccacatctccacccaaaatcttaaggcattaggtatatggatctcctatcttatatatccaacattt 10066574  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 43834618 - 43834538
Alignment:
Q  205 aagagacttagacatcacattttcatccaaaatcttaagacattagctat--gggtcccctcccttatatatccaacattt 283  Q
    |||||||||||||  ||||| | |||| |||| ||||||||||||| |||  |||||||||| ||||||||| ||||||||    
T  43834618 aagagacttagacgccacatctccatcaaaaaccttaagacattaggtatatgggtcccctctcttatatattcaacattt 43834538  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 5822213 - 5822175
Alignment:
Q  205 aagagacttagacatcacattttcatccaaaatcttaag 243  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  5822213 aagagacttaaacatcacattttcatctaaaatcttaag 5822175  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 22562075 - 22562032
Alignment:
Q  207 gagacttagacatcacattttcatccaaaatcttaagacattag 250  Q
    ||||||||||||||| || |||||||||||||||||| ||||||    
T  22562075 gagacttagacatcatatcttcatccaaaatcttaaggcattag 22562032  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 13097462 - 13097510
Alignment:
Q  34 ctaacttgtaactactttaaacaatgttaaaataattctaacaaatctc 82  Q
    ||||||| ||||||||||||||||||||||| ||| | || ||||||||    
T  13097462 ctaacttttaactactttaaacaatgttaaactaagtataccaaatctc 13097510  T

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