View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0640_high_1 (Length: 399)
Name: NF0640_high_1
Description: NF0640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0640_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 30 - 389
Target Start/End: Complemental strand, 37452715 - 37452358
Alignment:
| Q |
30 |
agttgggtaagaacattgaagttatggcggacctcaagactcaaatagaagtataaaattgacaaataactcattaataagctcgaggttcttttgctca |
129 |
Q |
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| T |
37452715 |
agttgggtaagaacattggagttatggcggacctcaagattcaaatagaagtataaaattgacaaataattcattaataagctcgaggttcttttgctta |
37452616 |
T |
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| Q |
130 |
gagcaagagttcgaatttatatcctcgcaattgaatgagtcaaatctaactgaatcaattactgttgacttatgtaacaaattaagatttgggttgctaa |
229 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37452615 |
gagcaagagttcgaatttatatcctcacaattgaatgagtcaaatctaactgaatcaattactgttgacttatgtaacaaattaagatttaggttgctaa |
37452516 |
T |
|
| Q |
230 |
actaaatagtaaggtattgtttactattctaacaagattaatcatatatggtattcaaattatgaaaacttttcttcctttaatcacatggtattcaaat |
329 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37452515 |
actaaatcgtaacgtattgtttactattctaacaagattaatc--atatggtattcaaattatgaaaacttttcttcctttaatcacatggtattcaaat |
37452418 |
T |
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| Q |
330 |
tacgaaaatgtttcttccttctttttctatattttaatatttgtcttcttttcacctatg |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37452417 |
tacgaaaatgtttcttccttctttttctatattttaatatttctcttcttttcacctatg |
37452358 |
T |
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