View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0640_high_3 (Length: 315)

Name: NF0640_high_3
Description: NF0640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0640_high_3
NF0640_high_3
[»] chr6 (56 HSPs)
chr6 (1-220)||(26861563-26861782)
chr6 (39-220)||(31284235-31284416)
chr6 (39-220)||(26622923-26623104)
chr6 (39-220)||(26728901-26729082)
chr6 (1-220)||(26823787-26824009)
chr6 (1-220)||(26646426-26646648)
chr6 (1-220)||(26752394-26752616)
chr6 (1-220)||(27677632-27677854)
chr6 (1-220)||(27678893-27679115)
chr6 (1-220)||(27698512-27698734)
chr6 (1-220)||(27706420-27706642)
chr6 (1-220)||(27718397-27718619)
chr6 (1-220)||(27611020-27611242)
chr6 (1-220)||(27724863-27725085)
chr6 (1-220)||(27593038-27593260)
chr6 (1-220)||(27604723-27604945)
chr6 (1-220)||(26802389-26802611)
chr6 (1-220)||(28781086-28781308)
chr6 (39-220)||(25579666-25579847)
chr6 (49-220)||(27531266-27531437)
chr6 (39-220)||(26142812-26142993)
chr6 (1-220)||(28786225-28786447)
chr6 (1-220)||(28792346-28792568)
chr6 (39-220)||(25481689-25481870)
chr6 (60-220)||(27229179-27229339)
chr6 (33-220)||(26655936-26656123)
chr6 (33-220)||(26761907-26762094)
chr6 (39-202)||(28234529-28234692)
chr6 (39-220)||(27338124-27338305)
chr6 (39-220)||(27398864-27399045)
chr6 (1-220)||(26884110-26884334)
chr6 (39-220)||(25538487-25538668)
chr6 (39-220)||(26055873-26056054)
chr6 (39-220)||(26075843-26076024)
chr6 (39-128)||(28139580-28139669)
chr6 (39-128)||(28242843-28242932)
chr6 (37-128)||(28185405-28185496)
chr6 (33-200)||(28226917-28227084)
chr6 (39-220)||(26048792-26048973)
chr6 (39-220)||(26069961-26070142)
chr6 (39-128)||(28181153-28181242)
chr6 (46-128)||(28325520-28325602)
chr6 (46-191)||(28149914-28150058)
chr6 (33-189)||(26341987-26342143)
chr6 (39-126)||(28297772-28297859)
chr6 (39-126)||(28514214-28514301)
chr6 (49-163)||(25506978-25507092)
chr6 (21-126)||(26848701-26848809)
chr6 (39-128)||(2184327-2184416)
chr6 (39-128)||(28098428-28098517)
chr6 (37-197)||(26893528-26893688)
chr6 (46-101)||(26937160-26937215)
chr6 (34-85)||(26975134-26975185)
chr6 (39-85)||(2184980-2185026)
chr6 (135-197)||(29467797-29467859)
chr6 (33-86)||(27665170-27665223)
[»] chr1 (3 HSPs)
chr1 (39-220)||(268403-268584)
chr1 (1-203)||(28164367-28164572)
chr1 (1-128)||(28127684-28127814)
[»] chr8 (2 HSPs)
chr8 (39-220)||(29273829-29274010)
chr8 (48-220)||(31903798-31903970)
[»] chr4 (5 HSPs)
chr4 (39-220)||(18679613-18679794)
chr4 (40-220)||(18724132-18724312)
chr4 (40-212)||(18731551-18731723)
chr4 (39-220)||(18699446-18699627)
chr4 (47-220)||(18655531-18655704)
[»] scaffold0349 (2 HSPs)
scaffold0349 (1-220)||(3439-3662)
scaffold0349 (1-220)||(14374-14595)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-220)||(4689-4911)
scaffold0277 (1-220)||(13650-13872)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-220)||(7472-7694)
[»] scaffold1254 (1 HSPs)
scaffold1254 (73-220)||(10-157)
[»] scaffold0038 (4 HSPs)
scaffold0038 (39-202)||(34690-34853)
scaffold0038 (39-128)||(43005-43094)
scaffold0038 (33-200)||(27415-27582)
scaffold0038 (46-128)||(116835-116917)
[»] scaffold0019 (1 HSPs)
scaffold0019 (39-204)||(58341-58506)
[»] chr2 (1 HSPs)
chr2 (33-189)||(3279666-3279822)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 56)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 26861782 - 26861563
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttgcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacag 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26861782 aaaacaggcaaaacgacgcgacccttttccttgcagttaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttggcagaaaacacag 26861683  T
Q  101 gaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattccctt 200  Q
    |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26861682 gaatgaaaattctagactcttcaatggcattgtcgagtgatcttttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattccctt 26861583  T
Q  201 gtcagtaagagccttgtaga 220  Q
    ||||||||||||||||||||    
T  26861582 gtcagtaagagccttgtaga 26861563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 31284416 - 31284235
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||||||| || || ||||||||||||||||||||||||| |||||||    
T  31284416 aatgatgtggacaagttcgtccaaacaaaacgacgaagaggcatagttggcagaaaacacggggataaaaatcctagactcttcaatggcattgtcgagt 31284317  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    ||| || ||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||    
T  31284316 gatggtgtgatttcatcccctctttgaagttcactatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtaga 31284235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 26623104 - 26622923
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| |||||||||||||||||||||||||| ||| | |||||||||  ||||||||||||||| ||||||||||||||||| || |||| ||| |||    
T  26623104 aatgatgtggacaagttcatccaaacaaaatgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagt 26623005  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    ||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  26623004 gatggtttgatttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtaga 26622923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 26729082 - 26728901
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| |||||||||||||||||||||||||| ||| | |||||||||  ||||||||||||||| ||||||||||||||||| || |||| ||| |||    
T  26729082 aatgatgtggacaagttcatccaaacaaaatgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagt 26728983  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    ||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  26728982 gatggtttgatttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtaga 26728901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 26824009 - 26823787
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttgcaatt---aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||||| ||| |||||||||||| |      |||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  26824009 aaaacaggcaaaacgaggcgccccttttccttgtagacgcgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttggcagaaaaca 26823910  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| |||||||||||||||||||||||||  | ||||||| ||| ||||| ||||||||||||||||||||||||||| |  |||||||| |||||    
T  26823909 caggaataaaaatcctagactcttcaatggcattattgagtgattgttcgattttatcccctctttgaagttcacgatcatcaaaaaaggtgtggattcc 26823810  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||| ||||||||||||||||    
T  26823809 cttgtctgtaagagccttgtaga 26823787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 26646648 - 26646426
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    ||||| ||||||||||  |||||||||  ||||   |||| |||||| ||||||||||| ||||||||||||   |||||||||||||||| ||||||||    
T  26646648 aaaacgggcaaaacgagacgaccctttgtcttgtagcaatgaatgatgtggacaagttcgtccaaacaaaatttagaagaggcatagttgatagaaaaca 26646549  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||| ||||||||||| | |  ||||||| || |||||||||| ||||| | ||| |||| |||||| |||||||||||||||||    
T  26646548 caggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcacaatcatcaatgaaggtgtgaattcc 26646449  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  26646448 cttgtcagtaagagccttgtaga 26646426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 26752616 - 26752394
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    ||||| ||||||||||  |||||||||  ||||   |||| |||||| ||||||||||| ||||||||||||   |||||||||||||||| ||||||||    
T  26752616 aaaacgggcaaaacgagacgaccctttgtcttgtagcaatgaatgatgtggacaagttcgtccaaacaaaatttagaagaggcatagttgatagaaaaca 26752517  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||| ||||||||||| | |  ||||||| || |||||||||| ||||| | ||| |||| |||||| |||||||||||||||||    
T  26752516 caggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcacaatcatcaatgaaggtgtgaattcc 26752417  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  26752416 cttgtcagtaagagccttgtaga 26752394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27677632 - 27677854
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||| ||||| ||||||||||  ||||   || | |||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  27677632 aaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaaca 27677731  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||| ||| ||||||||||||||||||||||| | |   |||||| || |||||||||||||||||||||||||| |||  || ||||||||||| |||||    
T  27677732 cagcaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccctctttgaagttcatgattgtcaatgaaggtgtggattcc 27677831  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||  ||||||||||||||    
T  27677832 cttgtcatcaagagccttgtaga 27677854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27679115 - 27678893
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||| ||||| ||||||||||  ||||   || | |||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  27679115 aaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaaca 27679016  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||||||||||||||| | |   |||||| || |||||||||| |||||||||||  ||   | ||| ||||||||||  |||||    
T  27679015 caggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatctcctctttgaagaccattcttatcaatgaaggtgttgattcc 27678916  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  27678915 cttgtcagtaagagccttgtaga 27678893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27698512 - 27698734
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttt---tccttgcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||||| ||||||||||   || | ||| | ||| || ||||||||||| |||||||||||||| ||||| |||||||||| ||||||||    
T  27698512 aaaacaggcaaaacgaggcgaccctttgtctcgtagcagtgaattatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttgagagaaaaca 27698611  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||| || |||||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| || |||||    
T  27698612 caggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcc 27698711  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  27698712 cttgtcagtaagagccttgtaga 27698734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27706420 - 27706642
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||| ||||| ||||||||||  ||||   || | |||||| ||||||||||| |||||||||||||| |||||||||||| ||| ||||||||    
T  27706420 aaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcataggtgatagaaaaca 27706519  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||||||||||||||| | |   |||||| || |||||||||||| ||||||||||||| |||  || ||||||||||| |||||    
T  27706520 caggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccttctttgaagttcatgattgtcaatgaaggtgtggattcc 27706619  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||  || |||||||||||    
T  27706620 cttgtcatcaaaagccttgtaga 27706642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27718397 - 27718619
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||||| ||||||||||  ||||   || | ||| || ||||||||||| ||||||||||| || |||||||||||||||| ||||||||    
T  27718397 aaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagttgatagaaaaca 27718496  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||| || |||||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| || |||||    
T  27718497 caggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcc 27718596  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  27718597 cttgtcagtaagagccttgtaga 27718619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27611020 - 27611242
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||||| ||||||||||  ||||   || | ||| || ||||||||||| ||||||||||| || |||||||||||||||| ||||||||    
T  27611020 aaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagttgatagaaaaca 27611119  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||| || |||||||| | |  ||||||| || |||||||||| |||||| |||| |||   ||||| |||||||| || |||||    
T  27611120 caggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctcttggaagatcattgtcatcaatgaaggtatggattcc 27611219  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  27611220 cttgtcagtaagagccttgtaga 27611242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27724863 - 27725085
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||||| ||||||||||  ||||   || | ||| || ||||||||||| ||||||||||| || ||| |||||||||||| ||||||||    
T  27724863 aaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaataggcatagttgatagaaaaca 27724962  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||| || |||||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| || |||||    
T  27724963 caggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcc 27725062  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  27725063 cttgtcagtaagagccttgtaga 27725085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27593038 - 27593260
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    ||||||||||||||   ||||||||||  ||||   |||| |||||| ||| ||||||| ||||||||||| || |||||||||||||||| ||||||||    
T  27593038 aaaacaggcaaaacagggcgaccctttgtcttgtagcaatgaatgatgtggtcaagttcgtccaaacaaaacgaagaagaggcatagttgatagaaaaca 27593137  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||||||||||||||| | |   |||||| || |||||||||  |||||||||||  ||   ||||| ||||||||||  |||||    
T  27593138 caggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatttcctctttgaagaccattgtcatcaatgaaggtgttgattcc 27593237  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  27593238 cttgtcagtaagagccttgtaga 27593260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27604723 - 27604945
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||||||||||||||||  | ||   |||| |||||| || |||||||||||||||||||| || ||||||||||| |||| ||||||||    
T  27604723 aaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaaggaagaagaggcatatttgatagaaaaca 27604822  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| |||||||| || || |||||||| | |   |||| | || |||||||||| |||||| |||| |||   ||||| |||||||| ||||||||    
T  27604823 caggaataaaaatcctggattcatcaatggccttgagaagtgctggtgtgatttcatctcctcttcgaagatcattttcatcaatgaaggtatgaattcc 27604922  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  27604923 cttgtcagtaagagccttgtaga 27604945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 26802611 - 26802389
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttcctt---gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||| |||||| |||| ||||||||||  |||   ||||| ||| || || |||||||| ||||| ||||||   |||||||||||||||| ||||||||    
T  26802611 aaaataggcaagacgaggcgaccctttgtcttatagcaatgaataatgtgaacaagttcgtccaagcaaaattttgaagaggcatagttgatagaaaaca 26802512  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||| ||||| ||||||||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| || |||||    
T  26802511 caggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcc 26802412  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    ||||||| |||||||||||||||    
T  26802411 cttgtcaataagagccttgtaga 26802389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28781308 - 28781086
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||||| |||||| |||  ||||   |||| ||| || || |||||||| ||||| ||||||   |||| ||||||||||| ||||||||    
T  28781308 aaaacaggcaaaacgaggcgaccttttgtcttgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgaagtggcatagttgatagaaaaca 28781209  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||| ||||| ||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| |  |||||    
T  28781208 caggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcc 28781109  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  28781108 cttgtcagtaagagccttgtaga 28781086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 25579847 - 25579666
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||||||| ||||||||||| | | | |||    
T  25579847 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagt 25579748  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    ||| || |||||||||| ||||||||||| |||  |||||| | ||||||  ||||||||||||||  ||||||||| ||||    
T  25579747 gatggtgtgatttcatctcctctttgaagatcattatcatcaaagaaggtacgaattcccttgtcaacaagagccttataga 25579666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 49 - 220
Target Start/End: Original strand, 27531266 - 27531437
Alignment:
Q  49 acaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttga 148  Q
    |||||||| |||||||||||||| ||||| ||||||||  ||||||| || ||||| ||||||||||| | |||||||||||  |  |||||| || |||    
T  27531266 acaagttcgtccaaacaaaatgaagaagatgcatagttttcagaaaatacgggaataaaaatcctagatttttcaatggcattttttagtgatggtgtga 27531365  T
Q  149 tttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    ||||||| ||||||||||| |||   ||||| |||||||| |  ||||||||||||||||||||||||||||    
T  27531366 tttcatctcctctttgaagatcattgtcatcaatgaaggtatagattcccttgtcagtaagagccttgtaga 27531437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 26142993 - 26142812
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||||||| ||||||||||| | | | |||    
T  26142993 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagt 26142894  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    ||| || |||||||||| ||||||| ||| |||  |||||| ||||| ||  ||||||||||||||  ||||||||| ||||    
T  26142893 gatggtgtgatttcatctcctctttcaagatcattatcatcaatgaaagtacgaattcccttgtcaacaagagccttataga 26142812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28786447 - 28786225
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||||| |||||| |||  ||||   |||| ||| || || |||||||| ||||| ||||||   || | ||| ||||||| ||||||||    
T  28786447 aaaacaggcaaaacgaggcgaccttttgtcttgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgatgtggcgtagttgatagaaaaca 28786348  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||| ||||| ||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| |  |||||    
T  28786347 caggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcc 28786248  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  28786247 cttgtcagtaagagccttgtaga 28786225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28792568 - 28792346
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||||| |||||| |||  ||||   |||| ||| || || |||||||| ||||| ||||||   || | ||| ||||||| ||||||||    
T  28792568 aaaacaggcaaaacgaggcgaccttttgtcttgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgatgtggcgtagttgatagaaaaca 28792469  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||| ||||| ||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| |  |||||    
T  28792468 caggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcc 28792369  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  28792368 cttgtcagtaagagccttgtaga 28792346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 25481870 - 25481689
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  |||||  |||||||||| ||||||||||| | | | |||    
T  25481870 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaatacaaatcctagattcttcaatggccttgacaagt 25481771  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    ||| || |||||||||| ||||||||||| |||   ||||| ||||| ||  ||||||||||||||  ||||||||| ||||    
T  25481770 gatggtgtgatttcatctcctctttgaagatcattttcatcaatgaaagtacgaattcccttgtcaacaagagccttataga 25481689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 27229339 - 27229179
Alignment:
Q  60 caaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccct 159  Q
    |||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||| ||| || |||||||| | | |||||||| || ||||||| || |||    
T  27229339 caaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatccgagattcgtcaatggccttgacgagtgatggtgtgatttcgtctcct 27229240  T
Q  160 ctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    |||||||| |||   ||||| |||||||| || ||||||||||||||||||||||||||||    
T  27229239 ctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtaga 27229179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 26656123 - 26655936
Alignment:
Q  33 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcg 132  Q
    ||||| |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| |||||||| || ||||||||||| |      
T  26656123 gcaatgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggcctta 26656024  T
Q  133 tcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
     |||||||| || |||||||||| |||||  |||| |||   ||||| ||||| || || |||||||| ||| |||||||||||||||    
T  26656023 acgagtgatggtgtgatttcatctcctctgagaagatcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtaga 26655936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 26762094 - 26761907
Alignment:
Q  33 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcg 132  Q
    ||||| |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| |||||||| || ||||||||||| |      
T  26762094 gcaatgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggcctta 26761995  T
Q  133 tcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
     |||||||| || |||||||||| |||||  |||| |||   ||||| ||||| || || |||||||| ||| |||||||||||||||    
T  26761994 acgagtgatggtgtgatttcatctcctctgagaagatcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtaga 26761907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 28234692 - 28234529
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || |||||||||||||||||||||||||||||||| | |   |||    
T  28234692 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagt 28234593  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgt 202  Q
    ||| || | |||||||| |||| |||||| || |  ||||| ||||||||||| ||||||||||    
T  28234592 gatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgt 28234529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 27338124 - 27338305
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||||||  ||||||| |  ||||| ||||||||||||||||||||||| | | | |||    
T  27338124 aatgatgtggacaagttcgtccaagcaaaatgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagt 27338223  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    ||| || || ||||||| ||||||| ||| ||    ||||| |||||||| |  |||||||||||| |||||||||||||||    
T  27338224 gatggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtaga 27338305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 27398864 - 27399045
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||||||  ||||||| |  ||||| ||||||||||||||||||||||| | | | |||    
T  27398864 aatgatgtggacaagttcgtccaagcaaaatgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagt 27398963  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    ||| || || ||||||| ||||||| ||| ||    ||||| |||||||| |  |||||||||||| |||||||||||||||    
T  27398964 gatggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtaga 27399045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 26884334 - 26884110
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttt---tccttgcaattaatga--tttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaa 95  Q
    |||||||||||||||| ||||||||||   || | ||| | |||||  | ||||||||||| |||||||||||||| ||||| |||||||||  ||||||    
T  26884334 aaaacaggcaaaacgaggcgaccctttgtctcgtagcagtgaatgacatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggtagaaaa 26884235  T
Q  96 cacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaatt 195  Q
     |  ||||| ||||| ||||| ||||||||||| | |  ||||||| || |||||||    |||||| |||| | |  |||||| ||||||||||| |||    
T  26884234 tattggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcgcttcctcttggaagatgattatcatcaatgaaggtgtggatt 26884135  T
Q  196 cccttgtcagtaagagccttgtaga 220  Q
    ||||||| |||||||||||||||||    
T  26884134 cccttgttagtaagagccttgtaga 26884110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 25538668 - 25538487
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||| ||||| ||||| ||||| | | | |||    
T  25538668 aatgatctggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaattctagattcttcgatggccttgacaagt 25538569  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    ||| || |||||||||| ||||||| ||| |||  |||||| ||||| ||   |||||||||||||  ||||||||| ||||    
T  25538568 gatggtgtgatttcatctcctctttcaagatcattatcatctatgaaagtactaattcccttgtcaacaagagccttataga 25538487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 26056054 - 26055873
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||| ||| ||||| ||||| | | | |||    
T  26056054 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagt 26055955  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    |||  | |||||||||| ||||||||||| |||   ||||| ||||| || | |||||||||||||  ||||||||| ||||    
T  26055954 gatgatgtgatttcatctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttataga 26055873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 26076024 - 26075843
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||| ||| ||||| ||||| | | | |||    
T  26076024 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagt 26075925  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    |||  | |||||||||| ||||||||||| |||   ||||| ||||| || | |||||||||||||  ||||||||| ||||    
T  26075924 gatgatgtgatttcatctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttataga 26075843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 28139669 - 28139580
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 128  Q
    |||||| ||||||||||| ||||| ||||| || ||||||||||||||||  ||||||||||| |||||||||||||| |||||||||||    
T  28139669 aatgatgtggacaagttcgtccaagcaaaacgaagaagaggcatagttgatggaaaacacagggatgaaaatcctagattcttcaatggc 28139580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 28242932 - 28242843
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 128  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || ||||||||||||||||||||||||||||||||    
T  28242932 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggc 28242843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 28185496 - 28185405
Alignment:
Q  37 ttaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 128  Q
    |||||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || || |||||||||||||||||||||||||||||    
T  28185496 ttaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggc 28185405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 28227084 - 28226917
Alignment:
Q  33 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcg 132  Q
    ||||| |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || |||||||||||||||||||| ||||||||| | | |    
T  28227084 gcaatgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttg 28226985  T
Q  133 tcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattccctt 200  Q
       ||||||  | | |||||||| |||| |||||| || | |||||| | ||| ||||||||||||||    
T  28226984 aaaagtgatgatgttatttcatcacctccttgaagctctctatcatcaaagaatgtgtgaattccctt 28226917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 26048973 - 26048792
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||||||| ||||| ||||| | | | |||    
T  26048973 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagt 26048874  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
        || |||||||||| ||||||| ||| |||  |||||| ||||| ||   ||||||||||||| | |||||||| ||||    
T  26048873 ttgggtgtgatttcatctcctctttcaagatcattatcatcaatgaaagtacaaattcccttgtcaatgagagccttataga 26048792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 26070142 - 26069961
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |  ||||| ||||||||||| ||||| ||||| | | | |||    
T  26070142 aatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagt 26070043  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
        || |||||||||| ||||||| ||| |||  |||||| ||||| ||   ||||||||||||| | |||||||| ||||    
T  26070042 ttgggtgtgatttcatctcctctttcaagatcattatcatcaatgaaagtacaaattcccttgtcaatgagagccttataga 26069961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 28181242 - 28181153
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 128  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || || |||||||||||||||||||||||||||||    
T  28181242 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggc 28181153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 28325602 - 28325520
Alignment:
Q  46 tggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 128  Q
    ||||||||||||||||| ||||| || ||||| ||||| |||| ||| || | ||||||||||||||||||||||||||||||    
T  28325602 tggacaagttcatccaagcaaaaggaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggc 28325520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 28150058 - 28149914
Alignment:
Q  46 tggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtt 145  Q
    ||||||||||| |||||||||||||| ||||| | |||||||| ||| || |  |||||||||||||| |||||||||||||| | |  ||||||| ||     
T  28150058 tggacaagttcgtccaaacaaaatgaagaagaagtatagttgatagagaagattggaatgaaaatcctggactcttcaatggccttg-agagtgatggtg 28149960  T
Q  146 tgatttcatcccctctttgaagttcacgatcatccatgaaggtgtg 191  Q
    ||||||| ||||||| || ||| ||   |||||| |||||||||||    
T  28149959 tgatttcgtcccctcgttaaagctccgtatcatcaatgaaggtgtg 28149914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 26341987 - 26342143
Alignment:
Q  33 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcg 132  Q
    ||||| |||||| ||||||||||| ||||||||||| || ||||| ||||||||||  || || |  |||||||||||||| |||||||||||||| | |    
T  26341987 gcaatgaatgatgtggacaagttcgtccaaacaaaacgaagaagaagcatagttgattgagaaaattggaatgaaaatcctggactcttcaatggctttg 26342086  T
Q  133 tcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtg 189  Q
     | |||||| || ||||||  || ||||  ||||| || | |||||| |||||||||    
T  26342087 acaagtgattgtgtgattttgtcacctccatgaagctccctatcatcaatgaaggtg 26342143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 28297772 - 28297859
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatg 126  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||  ||| || ||||||||||||||||||| ||||||||||    
T  28297772 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatg 28297859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 28514301 - 28514214
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatg 126  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||  ||| || ||||||||||||||||||| ||||||||||    
T  28514301 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatg 28514214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 25506978 - 25507092
Alignment:
Q  49 acaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttga 148  Q
    |||||||| ||||||||||||   |||||||||||||||| |||||  || ||||| ||||||||||| |||||||||||   | ||| |||| || |||    
T  25506978 acaagttcctccaaacaaaattttgaagaggcatagttgatagaaagaaccggaataaaaatcctagattcttcaatggcgatgacgactgatggtgtga 25507077  T
Q  149 tttcatcccctcttt 163  Q
    ||||||| |||||||    
T  25507078 tttcatctcctcttt 25507092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 26848809 - 26848701
Alignment:
Q  21 acccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagac 117  Q
    |||||||||||||   |||| |||||| ||||||||||| ||||||||||| || |||| |||||||||  |||| || ||| ||||| ||||||| ||     
T  26848809 acccttttccttggagcaatgaatgatgtggacaagttcgtccaaacaaaacgaagaagtggcatagttctcagagaatacaagaatggaaatcctcgag 26848710  T
Q  118 tcttcaatg 126  Q
    |||||||||    
T  26848709 tcttcaatg 26848701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 2184416 - 2184327
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 128  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||||||||    || || ||||| |||||||| || ||||||||||||||    
T  2184416 aatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagttctttgagaaaacagggatgaaaattctggactcttcaatggc 2184327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 28098428 - 28098517
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 128  Q
    |||||| |||||||||||||||||||||||  | ||||| ||||||||   ||| || || ||||| |||||||| |||||||| |||||    
T  28098428 aatgatgtggacaagttcatccaaacaaaacaaagaagaagcatagttcttagagaagaccggaattaaaatcctggactcttcgatggc 28098517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 197
Target Start/End: Original strand, 26893528 - 26893688
Alignment:
Q  37 ttaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcga 136  Q
    |||||||||| ||| ||||| ||||||||||||   ||||| |||||||||| ||| |  || |||||| | ||| ||||||||||||| || | |   |    
T  26893528 ttaatgattttgacgagttcttccaaacaaaatatagaagaagcatagttgatagagaggactggaatgtatatcatagactcttcaattgccttgataa 26893627  T
Q  137 gtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||| ||  |||||| || ||||| ||||| ||   |||||| |||||||||||||||||    
T  26893628 gtgatggtgagatttcgtcacctctatgaagctctgtatcatcaatgaaggtgtgaattcc 26893688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 26937215 - 26937160
Alignment:
Q  46 tggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacagg 101  Q
    ||||||||||| |||||||||||||| |||| ||||||||||| ||| || |||||    
T  26937215 tggacaagttcgtccaaacaaaatgaagaagtggcatagttgatagagaatacagg 26937160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 26975185 - 26975134
Alignment:
Q  34 caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagt 85  Q
    |||| |||||| ||||||||||| |||||||||||||| ||||| |||||||    
T  26975185 caatgaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagt 26975134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 2185026 - 2184980
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagt 85  Q
    |||||| ||||||||||| |||||||||||||| ||||| |||||||    
T  2185026 aatgatatggacaagttcgtccaaacaaaatgaagaagaagcatagt 2184980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 29467859 - 29467797
Alignment:
Q  135 gagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| || ||||||| || ||| ||||||||||   ||||||||||||||||||||||||    
T  29467859 gagtgatggtgtgatttcttcgcctttttgaagttcttcatcatccatgaaggtgtgaattcc 29467797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 27665170 - 27665223
Alignment:
Q  33 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagtt 86  Q
    ||||| |||||| |||||||||||||| ||||||||||| ||||  ||||||||    
T  27665170 gcaatgaatgatgtggacaagttcatctaaacaaaatgaagaagtagcatagtt 27665223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 268403 - 268584
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  268403 aatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggcattgtcgagt 268502  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  268503 gatggtttgatttcatcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtaga 268584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 28164367 - 28164572
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||| | ||||||||||  ||||   || | |||||| ||||||||||| |||||||||||||| |||||||||||||||| ||| ||||    
T  28164367 aaaacaggcaaaactaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagataaca 28164466  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||| | ||| | ||||||||| | |  || |||  || ||||||| || ||||| | ||| |||| |||||| ||||| |||||||||||    
T  28164467 caggaataaaaattcaagatttttcaatggccttgatgaatgacggtgtgatttcttctcctctctcaagatcacaatcatcaatgaatgtgtgaattcc 28164566  T
Q  198 cttgtc 203  Q
    ||||||    
T  28164567 cttgtc 28164572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 28127684 - 28127814
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||| | ||||||||||  ||||   || | |||||| || |||||||| |||||||||||||| |||||||||||||||  |||||| |    
T  28127684 aaaacaggcaaaactaggcgaccctttgtcttgtagcagtgaatgatgtgcacaagttcgtccaaacaaaatgaagaagaggcatagttggtagaaaata 28127783  T
Q  98 caggaatgaaaatcctagactcttcaatggc 128  Q
    ||||||| ||||| ||||| |||||||||||    
T  28127784 caggaataaaaattctagattcttcaatggc 28127814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 29273829 - 29274010
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| ||| |||||||    
T  29273829 aatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaaaattctagactcttcaatgacattgtcgagt 29273928  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    |||  |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||    
T  29273929 gatgatttgatttcatcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagtcttgtaga 29274010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 31903970 - 31903798
Alignment:
Q  48 gacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttg 147  Q
    |||||||||||  || |||||||| ||||| ||||||||   ||| | ||||  ||||  |||||||||||||||||| || ||    |||||| || ||    
T  31903970 gacaagttcatgtaagcaaaatgaagaagaagcatagtttttagagagcacaataatggcaatcctagactcttcaattgcctctaaaagtgatggtgtg 31903871  T
Q  148 atttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    |||||||  ||||||||||||||   ||| || || |||||||| |||||||| |||  |||||| |||||||    
T  31903870 atttcatgtcctctttgaagttcttcatcgtcaataaaggtgtggattcccttatcataaagagctttgtaga 31903798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 18679613 - 18679794
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  18679613 aatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagt 18679712  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    ||| |||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  18679713 gatggtttgatttcatcccctctttgcaggtcacggtcatcaatgaaggtgtggattcctttgtcagtaagagccttgtaga 18679794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 18724132 - 18724312
Alignment:
Q  40 atgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtg 139  Q
    ||||| ||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  18724132 atgatgtggacaagttcgttcaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtg 18724231  T
Q  140 atcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    || |||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  18724232 atggtttgatttcatcccctctttgcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagccttgtaga 18724312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 18731551 - 18731723
Alignment:
Q  40 atgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtg 139  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  18731551 atgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtg 18731650  T
Q  140 atcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagc 212  Q
    || |||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  18731651 atggtttgatttcatcccctctttgcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagc 18731723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 18699446 - 18699627
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| || |||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  18699446 aatgatgtgaacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagt 18699545  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    ||| |||||||||||||||| ||||| || ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||    
T  18699546 gatggtttgatttcatccccactttgcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtaga 18699627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 18655531 - 18655704
Alignment:
Q  47 ggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgttt 146  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| |||||||||| ||||    
T  18655531 ggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaagatcctagactcttgaatggcattgtcgagtgatggttt 18655630  T
Q  147 gatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
    |||||||||||| ||||| || ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||    
T  18655631 gatttcatccccactttgcagctcacggtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtaga 18655704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 3439 - 3662
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatag-ttgacagaaaac 96  Q
    |||||||||| ||||| ||||||||||  ||||   || | |||||| ||||||||||| |||||||||||||| |||||||||||| |||| |||||||    
T  3439 aaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcataggttgatagaaaac 3538  T
Q  97 acaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattc 196  Q
    |||||||| ||||||||||| || |||||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| || ||||    
T  3539 acaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattc 3638  T
Q  197 ccttgtcagtaagagccttgtaga 220  Q
    ||||||||||||||||||||||||    
T  3639 ccttgtcagtaagagccttgtaga 3662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 14374 - 14595
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||||| ||||||||||  ||||   || | ||| || ||||||||||| ||||||||||| || ||| |||||||||||| ||||||||    
T  14374 aaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaa-aggcatagttgatagaaaaca 14472  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||| || |||||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| || |||||    
T  14473 caggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcc 14572  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  14573 cttgtcagtaagagccttgtaga 14595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4689 - 4911
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||||| ||||||||||  ||||   || | ||| || ||||||||||| ||||||||||| || ||| ||||||||  || ||||||||    
T  4689 aaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaaaaggcatagaagatagaaaaca 4788  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||| || |||||||| | |  ||| ||| || |||||||||| ||||||||||| |||   ||||| |||||||| |  |||||    
T  4789 caggaataaaaatcctagattcatcaatggccttgcggagggatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcc 4888  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  4889 cttgtcagtaagagccttgtaga 4911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 13650 - 13872
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||||| |||||| |||  ||||   |||| ||| || || |||||||| ||||| ||||||   |||| ||| ||||||| ||||||||    
T  13650 aaaacaggcaaaacgaggcgaccttttgtcttgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgaagtggcgtagttgatagaaaaca 13749  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||| ||||| ||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| |  |||||    
T  13750 caggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcc 13849  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  13850 cttgtcagtaagagccttgtaga 13872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 7694 - 7472
Alignment:
Q  1 aaaacaggcaaaacgacgcgacccttttccttg---caattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaaca 97  Q
    |||||||||||||||| |||||| | |  ||||   |||| ||| || || |||||||| ||||| ||||||   |||| ||| ||||||| ||||||||    
T  7694 aaaacaggcaaaacgaggcgaccttctgtcttgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgaagtggcgtagttgatagaaaaca 7595  T
Q  98 caggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcc 197  Q
    ||||||| ||||||||||| ||||| ||||| | |  ||||||| || |||||||||| ||||||||||| |||   ||||| |||||||| |  |||||    
T  7594 caggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcc 7495  T
Q  198 cttgtcagtaagagccttgtaga 220  Q
    |||||||||||||||||||||||    
T  7494 cttgtcagtaagagccttgtaga 7472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 10 - 157
Alignment:
Q  73 gaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagtgatcgtttgatttcatcccctctttgaagttcac 172  Q
    |||| ||| ||||||| ||||||||||||||| ||||||||||| ||||| ||||| | |  ||||||| || |||||||||| ||||||||||| |||     
T  10 gaagtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcat 109  T
Q  173 gatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtaga 220  Q
      ||||| |||||||| |  ||||||||||||||||||||||||||||    
T  110 tgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtaga 157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 34853 - 34690
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || |||||||||||||||||||||||||||||||| | |   |||    
T  34853 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagt 34754  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgt 202  Q
    ||| || | |||||||| |||| |||||| || |  ||||| ||||||||||| ||||||||||    
T  34753 gatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgt 34690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 43094 - 43005
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 128  Q
    |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || ||||||||||||||||||||||||||||||||    
T  43094 aatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggc 43005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 27582 - 27415
Alignment:
Q  33 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcg 132  Q
    ||||| |||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| ||| || |||||||||||||||||||| ||||||||| | | |    
T  27582 gcaatgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttg 27483  T
Q  133 tcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattccctt 200  Q
       ||||||  | | |||||||| |||| |||||| || | |||||| | ||| ||||||||||||||    
T  27482 aaaagtgatgatgttatttcatcacctccttgaagctctctatcatcaaagaatgtgtgaattccctt 27415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 116917 - 116835
Alignment:
Q  46 tggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggc 128  Q
    ||||||||||||||||| ||||| || ||||| ||||| |||| ||| || | ||||||||||||||||||||||||||||||    
T  116917 tggacaagttcatccaagcaaaaggaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggc 116835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 204
Target Start/End: Original strand, 58341 - 58506
Alignment:
Q  39 aatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcgtcgagt 138  Q
    |||||| ||||||||||| | ||| |||||||| ||||| |||||||||| ||| || || |||||||||||||||||||||| |||||| | |   |||    
T  58341 aatgatgtggacaagttcgttcaagcaaaatgaagaagaagcatagttgatagacaagacgggaatgaaaatcctagactctttaatggccttgaaaagt 58440  T
Q  139 gatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtca 204  Q
    ||| || | ||||| || |||| |||||| || |  ||||||||||||||  | ||||||||||||    
T  58441 gatggtgttatttcgtcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtca 58506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 3279822 - 3279666
Alignment:
Q  33 gcaattaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttgacagaaaacacaggaatgaaaatcctagactcttcaatggcatcg 132  Q
    ||||| |||||| ||||||||||| ||||||||||||   ||||| |||||||||| ||| || || ||||| |||||| | |||||||| ||||| | |    
T  3279822 gcaatgaatgatgtggacaagttcgtccaaacaaaatatagaagaagcatagttgatagagaagaccggaataaaaatcatggactcttcgatggccttg 3279723  T
Q  133 tcgagtgatcgtttgatttcatcccctctttgaagttcacgatcatccatgaaggtg 189  Q
     | |||||| || |||||||||| ||||  ||||| || | |||||| |||||||||    
T  3279722 acaagtgattgtgtgatttcatcacctccatgaagctccctatcatcaatgaaggtg 3279666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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