View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0640_high_4 (Length: 268)

Name: NF0640_high_4
Description: NF0640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0640_high_4
NF0640_high_4
[»] chr4 (8 HSPs)
chr4 (1-221)||(6115715-6115935)
chr4 (1-78)||(17743324-17743401)
chr4 (1-78)||(9883673-9883751)
chr4 (13-74)||(16301267-16301327)
chr4 (140-219)||(9883829-9883909)
chr4 (1-80)||(17476734-17476813)
chr4 (140-172)||(23692239-23692271)
chr4 (116-172)||(39938199-39938255)
[»] chr5 (2 HSPs)
chr5 (1-78)||(25954880-25954957)
chr5 (1-72)||(16687739-16687810)
[»] chr3 (1 HSPs)
chr3 (2-74)||(19121675-19121747)
[»] chr8 (4 HSPs)
chr8 (140-221)||(12842684-12842766)
chr8 (176-221)||(20704187-20704232)
chr8 (1-70)||(35104343-35104412)
chr8 (1-80)||(12842837-12842916)
[»] chr1 (3 HSPs)
chr1 (1-74)||(34487921-34487994)
chr1 (12-81)||(12889563-12889632)
chr1 (17-80)||(20817653-20817716)
[»] chr2 (6 HSPs)
chr2 (15-80)||(18114450-18114515)
chr2 (1-80)||(16195572-16195651)
chr2 (2-73)||(27918775-27918846)
chr2 (1-78)||(35512468-35512546)
chr2 (140-221)||(27918928-27919009)
chr2 (82-217)||(30461997-30462134)
[»] chr7 (1 HSPs)
chr7 (1-80)||(4123224-4123303)
[»] chr6 (1 HSPs)
chr6 (1-74)||(8862884-8862959)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6115935 - 6115715
Alignment:
Q  1 caaaactctatcaaattcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttcttagtgtcaattaaatttcgtttaccact 100  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6115935 caaaactctgtcaaattcaaaagcgcacaaacacttagaaaattcttaccaactttagatcttagaatttcttagtgtcaattaaatttcgtttaccact 6115836  T
Q  101 ctctgggtataaaaagtaaacacatataaatctattgggaaactctgattgtataagtcctcttttgtgaggcatgaagtctcaaaagtgtgtgtttgag 200  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6115835 ctctgggtataaaaagtaaacacataaaaatctattggtaaactctgattgtataagtcctcttttgtgaggcatgaagtctcaaaattgtgtgtttgag 6115736  T
Q  201 cagttttaatcttgtgtgatt 221  Q
    |||||||||||||||||||||    
T  6115735 cagttttaatcttgtgtgatt 6115715  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 17743401 - 17743324
Alignment:
Q  1 caaaactctatcaaattcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttcttagtgt 78  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| || || | || ||| |||||||||||||    
T  17743401 caaaactctatcaaattcaaaagcgcacaaacacttagaaaattcttacaaaattcatattttataatttcttagtgt 17743324  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 9883673 - 9883751
Alignment:
Q  1 caaaactctatcaaattcaaaa-gcgcacaaacaattagaaaattcttaccaactttagatcttagaatttcttagtgt 78  Q
    |||||||||||||||||||||| | ||||||||| |||||| ||| |||| || || | ||||||||||||||||||||    
T  9883673 caaaactctatcaaattcaaaaagtgcacaaacacttagaatatttttacaaatttgatatcttagaatttcttagtgt 9883751  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 16301267 - 16301327
Alignment:
Q  13 aaattcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttctta 74  Q
    ||||||||||||||||||||| ||||||||||||||| |||||   ||||||||||||||||    
T  16301267 aaattcaaaagcgcacaaaca-ttagaaaattcttacaaacttattatcttagaatttctta 16301327  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 9883829 - 9883909
Alignment:
Q  140 aaactctgattgtataagtcctcttttgtgaggcatg-aagtctcaaaagtgtgtgtttgagcagttttaatcttgtgtga 219  Q
    ||||||||||||||||| ||||||| |||||| || | |||| | |||  ||||||||||||||||| |||||||||||||    
T  9883829 aaactctgattgtataattcctcttgtgtgagacaaggaagttttaaacttgtgtgtttgagcagttgtaatcttgtgtga 9883909  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 17476813 - 17476734
Alignment:
Q  1 caaaactctatcaaattcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttcttagtgtca 80  Q
    ||||||||| ||||||||||||  ||||||||| | | |||| || ||| ||||||| |||||| |||||||||||||||    
T  17476813 caaaactctgtcaaattcaaaaatgcacaaacactaaaaaaaatcatacaaactttatatcttaaaatttcttagtgtca 17476734  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 23692271 - 23692239
Alignment:
Q  140 aaactctgattgtataagtcctcttttgtgagg 172  Q
    |||||||||||||||||||| ||||||||||||    
T  23692271 aaactctgattgtataagtcatcttttgtgagg 23692239  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 39938255 - 39938199
Alignment:
Q  116 gtaaacacatataaatctattgggaaactctgattgtataagtcctcttttgtgagg 172  Q
    ||||||||||| |||| |||| | ||||||||||||||||| || | ||||||||||    
T  39938255 gtaaacacatacaaatttatttgtaaactctgattgtataaatcattttttgtgagg 39938199  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 25954880 - 25954957
Alignment:
Q  1 caaaactctatcaaattcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttcttagtgt 78  Q
    ||||||||| ||||||| ||||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  25954880 caaaactctgtcaaatttaaaagtgcacaaacacttagaaaattcttacaaactttatatcttagaatttcttagtgt 25954957  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 16687739 - 16687810
Alignment:
Q  1 caaaactctatcaaattcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttct 72  Q
    ||||||||| |||||||||||| | ||| |||| ||| ||||||||||| |||||   ||||||||||||||    
T  16687739 caaaactctgtcaaattcaaaaacacacgaacacttaaaaaattcttacaaacttagtatcttagaatttct 16687810  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 19121675 - 19121747
Alignment:
Q  2 aaaactctatcaaattcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttctta 74  Q
    |||||| | ||||||||||||||||||||||| ||||||||||||||| |||||   ||||||||||||||||    
T  19121675 aaaactttgtcaaattcaaaagcgcacaaacacttagaaaattcttacaaacttagtatcttagaatttctta 19121747  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 12842766 - 12842684
Alignment:
Q  140 aaactctgattgtataagtcctcttttgtgaggcat-gaagtctcaaaagtgtgtgtttgagcagttttaatcttgtgtgatt 221  Q
    ||||||| ||||||||| ||||||| |||||||||  |||||||||||  ||||||||||| || || |||||||||||||||    
T  12842766 aaactctaattgtataattcctcttgtgtgaggcaaagaagtctcaaacttgtgtgtttgatcaattgtaatcttgtgtgatt 12842684  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 20704232 - 20704187
Alignment:
Q  176 gaagtctcaaaagtgtgtgtttgagcagttttaatcttgtgtgatt 221  Q
    |||||||||||  ||||||||||||||||| |||||||||||||||    
T  20704232 gaagtctcaaacttgtgtgtttgagcagttgtaatcttgtgtgatt 20704187  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35104343 - 35104412
Alignment:
Q  1 caaaactctatcaaattcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaattt 70  Q
    ||||||||| ||||||| |||||| | |||||| ||||||||||||||| |||||   ||||||||||||    
T  35104343 caaaactctgtcaaatttaaaagcactcaaacacttagaaaattcttacaaacttagtatcttagaattt 35104412  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 12842916 - 12842837
Alignment:
Q  1 caaaactctatcaaattcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttcttagtgtca 80  Q
    ||||||||| ||||||||| |||| ||||||||  |||||||||| ||  ||||| | ||| || |||||||||||||||    
T  12842916 caaaactctgtcaaattcagaagcacacaaacatatagaaaattcgtatgaacttcatatcatataatttcttagtgtca 12842837  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 34487994 - 34487921
Alignment:
Q  1 caaaactctatcaaattcaaaagcgcacaaacaattagaaaattcttaccaactttag-atcttagaatttctta 74  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||||| ||| || || ||||||||||||||||    
T  34487994 caaaactctgtcaaattcaaaagcgtacaaacacttagaaaattctta-caaattgagcatcttagaatttctta 34487921  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 12889563 - 12889632
Alignment:
Q  12 caaattcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttcttagtgtcaa 81  Q
    ||||||||||||||||||||||  |||||||||| ||| |||||||  | || |||||||||||||||||    
T  12889563 caaattcaaaagcgcacaaacacatagaaaattcgtacaaactttatcttttggaatttcttagtgtcaa 12889632  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 20817653 - 20817716
Alignment:
Q  17 tcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttcttagtgtca 80  Q
    |||||||| || ||||  ||||||||||||||| ||||||| || |||| ||||||||||||||    
T  20817653 tcaaaagctcataaacgtttagaaaattcttacaaactttatattttaggatttcttagtgtca 20817716  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 18114515 - 18114450
Alignment:
Q  15 attcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttcttagtgtca 80  Q
    |||||||||||||||||||   ||||||||||||| ||||||| |||||| ||||| |||||||||    
T  18114515 attcaaaagcgcacaaacacaaagaaaattcttacaaactttatatcttataattttttagtgtca 18114450  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 16195572 - 16195651
Alignment:
Q  1 caaaactctatcaaattcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttcttagtgtca 80  Q
    ||||||||||||||||| ||||  || |||||| || |||||||||||| ||| | | |||||| |||||||||||||||    
T  16195572 caaaactctatcaaatttaaaattgctcaaacactttgaaaattcttacaaacataatatcttaaaatttcttagtgtca 16195651  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 27918775 - 27918846
Alignment:
Q  2 aaaactctatcaaattcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttctt 73  Q
    |||||||| |||||||||||||| |||||||| ||| ||| ||||||| |||||   |||||||||||||||    
T  27918775 aaaactctgtcaaattcaaaagcacacaaacacttaaaaagttcttacgaacttagtatcttagaatttctt 27918846  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 35512468 - 35512546
Alignment:
Q  1 caaaactctatcaaattcaaaagcgcacaaacaatt-agaaaattcttaccaactttagatcttagaatttcttagtgt 78  Q
    |||||||||||||||||||| || |||||||||||| | ||||||||||| |||||   ||||||  ||||||||||||    
T  35512468 caaaactctatcaaattcaagagtgcacaaacaattaaaaaaattcttacaaacttagtatcttaacatttcttagtgt 35512546  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 27918928 - 27919009
Alignment:
Q  140 aaactctgattgtataagtcctcttttgtgaggcatgaagtctcaaaagtgtgtgtttgagcagttttaatcttgtgtgatt 221  Q
    ||||||||||||||||||||||||| | ||||  | ||||||||  |  ||||| || ||||| || |||||||||||||||    
T  27918928 aaactctgattgtataagtcctcttgtatgagcaaggaagtctctgacttgtgtattggagcaattgtaatcttgtgtgatt 27919009  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 30462134 - 30461997
Alignment:
Q  82 ttaaatttcgtttaccactctctgggtataaaaagtaaacacatataaatctattggg-aaactctgattgtataagtcctcttttgtgaggc-atgaag 179  Q
    |||| ||| |||||||||||||||  ||||||  ||||||||| | |||| |||| |  ||||| ||||| ||||||||||||| |||||| | | ||||    
T  30462134 ttaagttttgtttaccactctctgattataaagtgtaaacacacacaaatttatttgataaactatgattttataagtcctcttgtgtgagacaaggaag 30462035  T
Q  180 tctcaaaagtgtgtgtttgagcagttttaatcttgtgt 217  Q
    ||| ||   |||||| ||||||| || |||||||||||    
T  30462034 tcttaattttgtgtgcttgagcaattgtaatcttgtgt 30461997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4123224 - 4123303
Alignment:
Q  1 caaaactctatcaaattcaaaagcgcacaaacaattagaaaattcttaccaactttagatcttagaatttcttagtgtca 80  Q
    |||||| || ||||||||||||| ||||||||| ||||||| || ||   ||||||| |||||| |||||||||||||||    
T  4123224 caaaacactgtcaaattcaaaagtgcacaaacacttagaaattttttctaaactttatatcttaaaatttcttagtgtca 4123303  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8862884 - 8862959
Alignment:
Q  1 caaaactctatcaaattcaaaagcgcacaaacaattag-aaaattcttaccaacttt-agatcttagaatttctta 74  Q
    |||||||||||||||||  | |||||||||||| | || ||||||||||| |||||| | ||||||||||||||||    
T  8862884 caaaactctatcaaattatatagcgcacaaacactcagaaaaattcttacaaactttcacatcttagaatttctta 8862959  T

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