View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0640_high_6 (Length: 226)
Name: NF0640_high_6
Description: NF0640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0640_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 11496094 - 11496205
Alignment:
| Q |
19 |
caattggaaatgtcagtgcaatagtcactctgatcttaaatataagcaaaaatttacaaatctctctctcttgttctaaaggaagaaatgagagaaaccc |
118 |
Q |
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| T |
11496094 |
caatttgaaatgtcagtgcaatagtcactctgatcttaaatataagcaaaaatttacaaatctctctctcttgttctaaaggaagaaatgagagaaaccc |
11496193 |
T |
|
| Q |
119 |
agaaatcaaatg |
130 |
Q |
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| T |
11496194 |
ataaatcaaatg |
11496205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 33423330 - 33423358
Alignment:
| Q |
43 |
tcactctgatcttaaatataagcaaaaat |
71 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33423330 |
tcactctgatcttaaatataagcaaaaat |
33423358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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