View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0640_high_7 (Length: 226)

Name: NF0640_high_7
Description: NF0640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0640_high_7
NF0640_high_7
[»] chr2 (1 HSPs)
chr2 (67-135)||(11495988-11496056)
[»] chr6 (1 HSPs)
chr6 (79-125)||(10338595-10338641)
[»] chr5 (1 HSPs)
chr5 (68-114)||(29587677-29587723)
[»] chr3 (1 HSPs)
chr3 (79-109)||(31652450-31652480)


Alignment Details
Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 11496056 - 11495988
Alignment:
Q  67 agttacatttgttcacttctattttcttaaattattatcggtgtttacaagttagtgttgtgtttgatg 135  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11496056 agttacatttgctcacttctattttcttaaattattaccggtgtttacaagttagtgttgtgtttgatg 11495988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 10338641 - 10338595
Alignment:
Q  79 tcacttctattttcttaaattattatcggtgtttacaagttagtgtt 125  Q
    |||||||||||||||||||||||||||  |||||||| | |||||||    
T  10338641 tcacttctattttcttaaattattatcaatgtttacacgctagtgtt 10338595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 29587723 - 29587677
Alignment:
Q  68 gttacatttgttcacttctattttcttaaattattatcggtgtttac 114  Q
    |||||||||  ||||||| ||||||||||||||||| ||||||||||    
T  29587723 gttacatttaatcacttccattttcttaaattattaccggtgtttac 29587677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 109
Target Start/End: Complemental strand, 31652480 - 31652450
Alignment:
Q  79 tcacttctattttcttaaattattatcggtg 109  Q
    |||||||||||||||||||||||||||||||    
T  31652480 tcacttctattttcttaaattattatcggtg 31652450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2915 times since January 2019
Visitors: 4018