View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0640_low_1 (Length: 514)
Name: NF0640_low_1
Description: NF0640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0640_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 40 - 493
Target Start/End: Complemental strand, 9474376 - 9473925
Alignment:
| Q |
40 |
gtaacatgtcccatagcacccacctccttcagcgaaacaccactccaaactctgcagactagactccactgctccaaatggccaatggttagcaacccaa |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
9474376 |
gtaacatgtcccatagcacccacctccttcagcgaaacaccactccaaactctgcagaatagactccactgctccaaatgaccaatggttagaaacccaa |
9474277 |
T |
|
| Q |
140 |
tgactattgtccagatgcggcctaaccatgagttcatgtcttgcaatcggattgcatgtctccttgatgataaatttgacaagtgcaccaaactgtttca |
239 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9474276 |
tgactattgtctagatgcggcctaaccatgagttcatgtct-gcaatcgggttgcatgtctccttgatgataaatttgacaggtgcaccaaactgtttca |
9474178 |
T |
|
| Q |
240 |
tgtaacacaacaacaagatatcgtctccacatgaattgttgttttcaaccaggcaatttactaaacttataatttaaaactataaattgaggggagtttg |
339 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
9474177 |
tgtaacacaacaataagatatcgtctccacatgaattgttgttttcaaccaggcaatttactaaacttataatttaaaaccataaattgaagggagtttg |
9474078 |
T |
|
| Q |
340 |
aaaagatgtttgattacgatgaaaagtaaatgagttttttattcatattttaaacgcgattaaaattcttcgaatctcctctaccttttcgttggattaa |
439 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9474077 |
aaaagatgtttgattacgatgaaaagtaaatgagt-ttttattcatattttaaacgcgattaaaattcttcgaatctcctctaccttttcgttggattaa |
9473979 |
T |
|
| Q |
440 |
tgcaagtcttatatcaaatatgatctaaggattatataaatgatggctaacctc |
493 |
Q |
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| T |
9473978 |
tgcaagtcttatatcaaatatgatataaggattatataaatgatggctaacctc |
9473925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 20039825 - 20039772
Alignment:
| Q |
274 |
attgttgttttcaaccaggcaatttactaaacttataatttaaaactataaatt |
327 |
Q |
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|||||||||||| | |||||||||||||||||||||||| ||||||||||||| |
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| T |
20039825 |
attgttgttttctattaggcaatttactaaacttataattaaaaactataaatt |
20039772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 430 - 491
Target Start/End: Complemental strand, 7196477 - 7196416
Alignment:
| Q |
430 |
gttggattaatgcaagtcttatatcaaatatgatctaaggattatataaatgatggctaacc |
491 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||| ||||||||| |||||| ||||| ||||| |
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|
| T |
7196477 |
gttggattaatgcacgtcatataccaaatatgacctaaggattgtataaacgatggttaacc |
7196416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 7196611 - 7196565
Alignment:
| Q |
293 |
caatttactaaacttataatttaaaactataaattgaggggagtttg |
339 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| ||||| |||| |
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|
| T |
7196611 |
caatttactaaacttatatttaaaaactataaattggggggaatttg |
7196565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 493
Target Start/End: Complemental strand, 26855727 - 26855529
Alignment:
| Q |
294 |
aatttactaaacttataatttaaaactataaattgaggggagtttgaaaagatgtttgattacgatgaaaagtaaatgagttttttattcatattttaaa |
393 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| |||||| ||||||| ||||||||| | ||| ||||||||||| ||||| ||| | || || || |
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| T |
26855727 |
aatttacaaaacttatactttaaaactataaatt-aggggaatttgaaagattgtttgattgcaatgcaaagtaaatgaatttttgatttagatgttgaa |
26855629 |
T |
|
| Q |
394 |
cgcgattaaaattcttcgaatctcctctaccttttcgttggattaatgcaagtcttatatcaaatatgatctaaggattatataaatgatggctaacctc |
493 |
Q |
| |
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|| ||| |||||| |||||||||| | || || ||| ||||||||| || || | ||||||||| |||||| ||||||||||||||| ||||||| |
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| T |
26855628 |
cgttgttaggattctttgaatctcctccatctctttgttcaattaatgcatgttctaaaccaaatatgacctaaggtttatataaatgatggttaacctc |
26855529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 26883766 - 26883697
Alignment:
| Q |
258 |
tatcgtctccacatgaattgttgttttcaaccaggcaatttactaaacttataatttaaaactataaatt |
327 |
Q |
| |
|
||||||||||||||| |||||| ||||| | ||| |||||||||||||| || || ||||||||||||| |
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| T |
26883766 |
tatcgtctccacatggattgttattttctaacagaaaatttactaaacttttatttaaaaactataaatt |
26883697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 7142515 - 7142547
Alignment:
| Q |
204 |
tgatgataaatttgacaagtgcaccaaactgtt |
236 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |
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|
| T |
7142515 |
tgatgacaaatttgacaagtgcaccaaactgtt |
7142547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 4568877 - 4568929
Alignment:
| Q |
266 |
ccacatgaattgttgttttcaaccaggcaatttactaaacttataatttaaaa |
318 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| ||||||||||||| |||| |
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| T |
4568877 |
ccacatggattgttgttttcaactaggcaatttattaaacttataattaaaaa |
4568929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 342
Target Start/End: Original strand, 12809455 - 12809582
Alignment:
| Q |
213 |
atttgacaagtgcaccaaactgtttcatgtaacacaacaacaagatatcgtctccacatgaattgttgttttcaaccaggcaatttactaaacttataat |
312 |
Q |
| |
|
||||| |||||||||| ||| |||||| |||| | | || ||| |||| ||||||||| |||||||||| | || | ||||| || ||||||||| || |
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|
| T |
12809455 |
atttggcaagtgcacctaacagtttcaagtaataaagtaataagttatcatctccacattgattgttgttt-ctactatgcaatataataaacttatgat |
12809553 |
T |
|
| Q |
313 |
ttaaaactataaattgaggggagtttgaaa |
342 |
Q |
| |
|
| ||||||||||||||| |||||||||||| |
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|
| T |
12809554 |
taaaaactataaattga-gggagtttgaaa |
12809582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 11077034 - 11077001
Alignment:
| Q |
202 |
cttgatgataaatttgacaagtgcaccaaactgt |
235 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
11077034 |
cttgatgataaatttggcaagtgcaccaaactgt |
11077001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 7706470 - 7706498
Alignment:
| Q |
210 |
taaatttgacaagtgcaccaaactgtttc |
238 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
7706470 |
taaatttgacaagtgcaccaaactgtttc |
7706498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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