View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0640_low_11 (Length: 250)

Name: NF0640_low_11
Description: NF0640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0640_low_11
NF0640_low_11
[»] chr4 (6 HSPs)
chr4 (1-193)||(6116171-6116366)
chr4 (8-193)||(9883198-9883383)
chr4 (129-192)||(24715761-24715824)
chr4 (93-189)||(35150309-35150405)
chr4 (131-189)||(17743813-17743871)
chr4 (130-191)||(12285966-12286027)
[»] chr7 (1 HSPs)
chr7 (89-193)||(6414694-6414798)
[»] chr2 (1 HSPs)
chr2 (124-189)||(24386192-24386257)
[»] chr1 (2 HSPs)
chr1 (149-187)||(12900397-12900435)
chr1 (84-159)||(12893090-12893166)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 6116171 - 6116366
Alignment:
Q  1 aaagtggcgttccttcagatgaaaacaaaattggtcaaagtctcttcagagtgttgactgctaacatgtccatcagaacaagtttccttcagaacttgct 100  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  6116171 aaagtggcgttccttgagaagaaaacaaaattggtcaaagtctcttcagagtgttgactgctaacatgcccatcagaacaagtttccttcagaactggct 6116270  T
Q  101 ttcatcagag---tcttcaatgttgaatgcaacttctaatcatagcttttattttttgttgacctttcttcagaccatcgtctaagtcttcaaaag 193  Q
    ||||||||||   ||||||||||||||| ||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6116271 ttcatcagagtcttcttcaatgttgaatacaactttggatcatagcttttactttttgttgacctttcttcagaccatcgtctaagtcttcaaaag 6116366  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 9883383 - 9883198
Alignment:
Q  8 cgttccttcagatgaaaacaaaattggtcaaagtctcttcagagtgttgactgctaacatgtccatcagaacaagtttccttcagaacttgctttcatca 107  Q
    |||||||||||| ||| |||||| | |||| ||| |||| ||||||||||||| | || ||||||| |||||| ||||||| | ||| |||||||||| |    
T  9883383 cgttccttcagaagaagacaaaactagtcagagtttctttagagtgttgactgttgacgtgtccatgagaacatgtttcctgcggaatttgctttcatta 9883284  T
Q  108 gagtcttcaatgttgaatgcaacttctaatcatagcttttattttttgttgacctttcttcagaccatcgtctaagtcttcaaaag 193  Q
    |||||||||| | | |||| | |||||||| | |||| | | ||| |||| | ||||||||||| |||| || |||||||||||||    
T  9883283 gagtcttcaagggtaaatgaaccttctaattagagctctgaatttatgtttatctttcttcagatcatcttccaagtcttcaaaag 9883198  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 24715824 - 24715761
Alignment:
Q  129 acttctaatcatagcttttattttttgttgacctttcttcagaccatcgtctaagtcttcaaaa 192  Q
    ||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||||||||    
T  24715824 acttctaatcaaagcttttactttttattgacctttcttcagaccatcttctaagtcttcaaaa 24715761  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 35150405 - 35150309
Alignment:
Q  93 aacttgctttcatcagagtcttcaatgttgaatgcaacttctaatcatagcttttattttttgttgacctttcttcagaccatcgtctaagtcttca 189  Q
    |||||| | ||||||| |||||||| |||  ||||| |||||||||| | |||| |||||||||||||||||||||| | |||| ||||||||||||    
T  35150405 aacttgatctcatcagggtcttcaaagtttgatgcatcttctaatcagaactttaattttttgttgacctttcttcatatcatcttctaagtcttca 35150309  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 17743813 - 17743871
Alignment:
Q  131 ttctaatcatagcttttattttttgttgacctttcttcagaccatcgtctaagtcttca 189  Q
    |||| |||| |||||| | |||||||||||||||||||||| ||||  |||||||||||    
T  17743813 ttctgatcagagctttgactttttgttgacctttcttcagatcatctgctaagtcttca 17743871  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 12286027 - 12285966
Alignment:
Q  130 cttctaatcatagcttttattttttgttgacctttcttcagaccatcgtctaagtcttcaaa 191  Q
    |||||||| ||| |||| | ||||| |||||||||||||| | |||| ||||||||||||||    
T  12286027 cttctaataataactttgactttttattgacctttcttcatatcatcttctaagtcttcaaa 12285966  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 6414694 - 6414798
Alignment:
Q  89 tcagaacttgctttcatcagagtcttcaatgttgaatgcaacttctaatcatagcttttattttttgttgacctttcttcagaccatcgtctaagtcttc 188  Q
    |||||||||| | ||||||||||||| ||   |  ||||||||||| ||||||||||| |||||||||||||||| ||||| |  ||| | |||||||||    
T  6414694 tcagaacttgatctcatcagagtctttaagacttgatgcaacttctgatcatagctttgattttttgttgaccttacttcatataatcttgtaagtcttc 6414793  T
Q  189 aaaag 193  Q
    |||||    
T  6414794 aaaag 6414798  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 24386192 - 24386257
Alignment:
Q  124 atgcaacttctaatcatagcttttattttttgttgacctttcttcagaccatcgtctaagtcttca 189  Q
    |||||| |||| ||||||||||||| |||||||||||||| ||| ||| ||| |||||||||||||    
T  24386192 atgcaaattctgatcatagcttttaatttttgttgaccttcctttagatcatggtctaagtcttca 24386257  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 12900435 - 12900397
Alignment:
Q  149 ttttttgttgacctttcttcagaccatcgtctaagtctt 187  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  12900435 ttttttgttgacctttcttcagatcatcttctaagtctt 12900397  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 12893166 - 12893090
Alignment:
Q  84 ttccttcagaacttgctttcatcagagtcttcaatgttgaatgcaacttctaatcatagctttta-ttttttgttga 159  Q
    |||| |||||||||| ||||||||||||||||||   | ||| || |||||||| | |||||||| |||||||||||    
T  12893166 ttccatcagaacttgttttcatcagagtcttcaaaacttaatacatcttctaataagagcttttacttttttgttga 12893090  T

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