View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0640_low_2 (Length: 495)

Name: NF0640_low_2
Description: NF0640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0640_low_2
NF0640_low_2
[»] chr4 (4 HSPs)
chr4 (23-388)||(21872984-21873350)
chr4 (23-388)||(21928845-21929211)
chr4 (347-388)||(16184902-16184943)
chr4 (348-389)||(34515819-34515859)
[»] chr6 (3 HSPs)
chr6 (347-388)||(9027238-9027279)
chr6 (353-390)||(32978852-32978889)
chr6 (347-387)||(3209471-3209511)
[»] chr7 (5 HSPs)
chr7 (357-390)||(10043013-10043046)
chr7 (353-388)||(9778576-9778611)
chr7 (347-388)||(21864879-21864920)
chr7 (347-388)||(24105749-24105790)
chr7 (347-388)||(40131946-40131987)
[»] chr2 (4 HSPs)
chr2 (347-388)||(12224294-12224335)
chr2 (347-386)||(32321341-32321380)
chr2 (353-390)||(2438672-2438709)
chr2 (353-382)||(27460111-27460140)
[»] chr8 (5 HSPs)
chr8 (353-388)||(22652058-22652093)
chr8 (356-390)||(44462151-44462185)
chr8 (356-390)||(44469684-44469718)
chr8 (347-384)||(13436917-13436954)
chr8 (352-388)||(22204714-22204750)
[»] chr3 (6 HSPs)
chr3 (353-388)||(15999963-15999998)
chr3 (353-387)||(29508522-29508556)
chr3 (347-388)||(10455867-10455908)
chr3 (347-388)||(40052383-40052424)
chr3 (353-390)||(40993288-40993325)
chr3 (348-388)||(21720843-21720883)
[»] chr1 (2 HSPs)
chr1 (353-388)||(9828126-9828161)
chr1 (347-388)||(1486651-1486692)
[»] chr5 (2 HSPs)
chr5 (353-390)||(15382554-15382591)
chr5 (353-390)||(39342511-39342548)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 23 - 388
Target Start/End: Original strand, 21872984 - 21873350
Alignment:
Q  23 tattgcatccgaataattaaattgtaacgagttataattttcagtgattcctccattagcagcactccaaattgaagatgtggaaaatctgctctagtcc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21872984 tattgcatccgaataattaaattgtaacgagttataattttcagtgattcctccattagcagcactccaaattgaagatgtggaaaatctgctctagtcc 21873083  T
Q  123 tagaaaatagaaagaaatacatctccatgtaagtaaagtaactacatattgcatttggcaatgctcatcaatgatcaaactctaacacaacttaacaaac 222  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21873084 tagaaaatagaacgaaatacatctccatgtaagtaaagtaactacatattgcatttggcaatgctcatcaatgatcaaactctaacacaacttaacaaac 21873183  T
Q  223 acatttcctcaacccttcactctcactttgacctaaagcaaaatcattgtgtctcccaagcctacaaaaaagaaagcc-aaaacccttctggttttcatg 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21873184 acatttcctcaacccttcactctcactttgacctaaagcaaaatcattttgtctcccaagcctacaaaaaagaaagccaaaaacccttctggttttcatg 21873283  T
Q  322 tgctgaaatattcatcagtaactatgcacaaacactccttggattagacgtgtcccggtgtcggaca 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21873284 tgctgaaatattcatcagtaactatgcacaaacactccttggattagacgtgtcccggtgtcggaca 21873350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 23 - 388
Target Start/End: Original strand, 21928845 - 21929211
Alignment:
Q  23 tattgcatccgaataattaaattgtaacgagttataattttcagtgattcctccattagcagcactccaaattgaagatgtggaaaatctgctctagtcc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21928845 tattgcatccgaataattaaattgtaacgagttataattttcagtgattcctccattagcagcactccaaattgaagatgtggaaaatctgctctagtcc 21928944  T
Q  123 tagaaaatagaaagaaatacatctccatgtaagtaaagtaactacatattgcatttggcaatgctcatcaatgatcaaactctaacacaacttaacaaac 222  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21928945 tagaaaatagaacgaaatacatctccatgtaagtaaagtaactacatattgcatttggcaatgctcatcaatgatcaaactctaacacaacttaacaaac 21929044  T
Q  223 acatttcctcaacccttcactctcactttgacctaaagcaaaatcattgtgtctcccaagcctacaaaaaagaaagcc-aaaacccttctggttttcatg 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21929045 acatttcctcaacccttcactctcactttgacctaaagcaaaatcattttgtctcccaagcctacaaaaaagaaagccaaaaacccttctggttttcatg 21929144  T
Q  322 tgctgaaatattcatcagtaactatgcacaaacactccttggattagacgtgtcccggtgtcggaca 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21929145 tgctgaaatattcatcagtaactatgcacaaacactccttggattagacgtgtcccggtgtcggaca 21929211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 16184943 - 16184902
Alignment:
Q  347 gcacaaacactccttggattagacgtgtcccggtgtcggaca 388  Q
    |||||||||||||| ||||||| |||||||| ||||||||||    
T  16184943 gcacaaacactcctcggattaggcgtgtcccagtgtcggaca 16184902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 34515819 - 34515859
Alignment:
Q  348 cacaaacactccttggattagacgtgtcccggtgtcggacat 389  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  34515819 cacagacactccttggattagacgtgtccc-gtgtcggacat 34515859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 9027279 - 9027238
Alignment:
Q  347 gcacaaacactccttggattagacgtgtcccggtgtcggaca 388  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  9027279 gcacaaacactccttggattagccgtgtcccggtgtcggaca 9027238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 32978852 - 32978889
Alignment:
Q  353 acactccttggattagacgtgtcccggtgtcggacatg 390  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32978852 acactccttggattagacgtgtcccggtgtcggacatg 32978889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 387
Target Start/End: Complemental strand, 3209511 - 3209471
Alignment:
Q  347 gcacaaacactccttggattagacgtgtcccggtgtcggac 387  Q
    |||||||||||||| ||||||| ||||||| ||||||||||    
T  3209511 gcacaaacactcctcggattaggcgtgtccgggtgtcggac 3209471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 390
Target Start/End: Complemental strand, 10043046 - 10043013
Alignment:
Q  357 tccttggattagacgtgtcccggtgtcggacatg 390  Q
    ||||||||||||||||||||||||||||||||||    
T  10043046 tccttggattagacgtgtcccggtgtcggacatg 10043013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 388
Target Start/End: Complemental strand, 9778611 - 9778576
Alignment:
Q  353 acactccttggattagacgtgtcccggtgtcggaca 388  Q
    |||||||||||||||| |||||||||||||||||||    
T  9778611 acactccttggattaggcgtgtcccggtgtcggaca 9778576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 21864920 - 21864879
Alignment:
Q  347 gcacaaacactccttggattagacgtgtcccggtgtcggaca 388  Q
    ||||| |||||||| | |||||||||||||||||||||||||    
T  21864920 gcacagacactcctcgaattagacgtgtcccggtgtcggaca 21864879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 24105790 - 24105749
Alignment:
Q  347 gcacaaacactccttggattagacgtgtcccggtgtcggaca 388  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  24105790 gcacaaacactcctcgggttaggcgtgtcccggtgtcggaca 24105749  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 40131946 - 40131987
Alignment:
Q  347 gcacaaacactccttggattagacgtgtcccggtgtcggaca 388  Q
    ||||| |||||||| |||||||||||||||| ||||||||||    
T  40131946 gcacagacactcctcggattagacgtgtccctgtgtcggaca 40131987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 12224335 - 12224294
Alignment:
Q  347 gcacaaacactccttggattagacgtgtcccggtgtcggaca 388  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  12224335 gcacaaacactccttggattaggcgtgtcccagtgtcggaca 12224294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 32321380 - 32321341
Alignment:
Q  347 gcacaaacactccttggattagacgtgtcccggtgtcgga 386  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  32321380 gcacaaatactccttggattaggcgtgtcccggtgtcgga 32321341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 2438672 - 2438709
Alignment:
Q  353 acactccttggattagacgtgtcccggtgtcggacatg 390  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  2438672 acactcctcggattaggcgtgtcccggtgtcggacatg 2438709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 382
Target Start/End: Complemental strand, 27460140 - 27460111
Alignment:
Q  353 acactccttggattagacgtgtcccggtgt 382  Q
    ||||||||||||||||||||||||||||||    
T  27460140 acactccttggattagacgtgtcccggtgt 27460111  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 388
Target Start/End: Complemental strand, 22652093 - 22652058
Alignment:
Q  353 acactccttggattagacgtgtcccggtgtcggaca 388  Q
    |||||||| |||||||||||||||||||||||||||    
T  22652093 acactcctcggattagacgtgtcccggtgtcggaca 22652058  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 44462151 - 44462185
Alignment:
Q  356 ctccttggattagacgtgtcccggtgtcggacatg 390  Q
    ||||| |||||||||||||||||||||||||||||    
T  44462151 ctcctcggattagacgtgtcccggtgtcggacatg 44462185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 44469684 - 44469718
Alignment:
Q  356 ctccttggattagacgtgtcccggtgtcggacatg 390  Q
    ||||| |||||||||||||||||||||||||||||    
T  44469684 ctcctcggattagacgtgtcccggtgtcggacatg 44469718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 13436917 - 13436954
Alignment:
Q  347 gcacaaacactccttggattagacgtgtcccggtgtcg 384  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  13436917 gcacagacactccttggattaggcgtgtcccggtgtcg 13436954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 388
Target Start/End: Complemental strand, 22204750 - 22204714
Alignment:
Q  352 aacactccttggattagacgtgtcccggtgtcggaca 388  Q
    |||||||||||||||||||||||| | ||||||||||    
T  22204750 aacactccttggattagacgtgtctcagtgtcggaca 22204714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 388
Target Start/End: Original strand, 15999963 - 15999998
Alignment:
Q  353 acactccttggattagacgtgtcccggtgtcggaca 388  Q
    |||||||||||||||| |||||||||||||||||||    
T  15999963 acactccttggattaggcgtgtcccggtgtcggaca 15999998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 387
Target Start/End: Complemental strand, 29508556 - 29508522
Alignment:
Q  353 acactccttggattagacgtgtcccggtgtcggac 387  Q
    ||||| |||||||||||||||||||||||||||||    
T  29508556 acacttcttggattagacgtgtcccggtgtcggac 29508522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 10455908 - 10455867
Alignment:
Q  347 gcacaaacactccttggattagacgtgtcccggtgtcggaca 388  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||    
T  10455908 gcacatacactccttggattaaacgtgtcccagtgtcggaca 10455867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 40052424 - 40052383
Alignment:
Q  347 gcacaaacactccttggattagacgtgtcccggtgtcggaca 388  Q
    |||| ||||||||| ||||||| |||||||||||||||||||    
T  40052424 gcacgaacactcctcggattaggcgtgtcccggtgtcggaca 40052383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 40993288 - 40993325
Alignment:
Q  353 acactccttggattagacgtgtcccggtgtcggacatg 390  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  40993288 acactcctcggattaggcgtgtcccggtgtcggacatg 40993325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 21720883 - 21720843
Alignment:
Q  348 cacaaacactccttggattagacgtgtcccggtgtcggaca 388  Q
    |||| |||||| | |||||||||||||||||||||||||||    
T  21720883 cacagacactcatcggattagacgtgtcccggtgtcggaca 21720843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 388
Target Start/End: Complemental strand, 9828161 - 9828126
Alignment:
Q  353 acactccttggattagacgtgtcccggtgtcggaca 388  Q
    |||||||| |||||||||||||||||||||||||||    
T  9828161 acactcctcggattagacgtgtcccggtgtcggaca 9828126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 1486651 - 1486692
Alignment:
Q  347 gcacaaacactccttggattagacgtgtcccggtgtcggaca 388  Q
    ||||| |||||||| ||||||| |||||||||||||||||||    
T  1486651 gcacagacactcctcggattaggcgtgtcccggtgtcggaca 1486692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 15382591 - 15382554
Alignment:
Q  353 acactccttggattagacgtgtcccggtgtcggacatg 390  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  15382591 acactcctcggattaggcgtgtcccggtgtcggacatg 15382554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 39342548 - 39342511
Alignment:
Q  353 acactccttggattagacgtgtcccggtgtcggacatg 390  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  39342548 acactccttggattaggcgtgtcccggtgtctgacatg 39342511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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