View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0640_low_7 (Length: 271)
Name: NF0640_low_7
Description: NF0640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0640_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 21872726 - 21872981
Alignment:
| Q |
7 |
gcagcacagaacaacaccaaatacgatactgacaagtgacaagcaaacacttataataatataatagcgtgtttggttttgcttttcttcaccgcatttt |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21872726 |
gcagcacaaaacaacaccaaatacgatactgacaagtgacaagcaaacacttataataatataatagtgtgtttggttttgcttttcttcaccgcatttt |
21872825 |
T |
|
| Q |
107 |
tgccgtgattttgagaagctagtatttgtagcttcaaatgaaaatcccatcgtgtaactaaacgaaggttaaagaaatataagtgattgaatgcaattac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21872826 |
tgccgtgattttgagaagctagtatttgtagcttcaaatgaaaatctcattgtgtaactaaacgaaggttaaagaaatataagtgatttaatgcaattac |
21872925 |
T |
|
| Q |
207 |
atttgtcggtaacttatcgctattaaacacagaaacaccttcatgtaagtaaagta |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21872926 |
atttgtcggtaacttatcgctattaaacacagaaacaccttcctgtaagtaaagta |
21872981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 21928587 - 21928842
Alignment:
| Q |
7 |
gcagcacagaacaacaccaaatacgatactgacaagtgacaagcaaacacttataataatataatagcgtgtttggttttgcttttcttcaccgcatttt |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21928587 |
gcagcacaaaacaacaccaaatacgatactgacaagtgacaagcaaacacttataataatataatagtgtgtttggttttgcttttcttcaccgcatttt |
21928686 |
T |
|
| Q |
107 |
tgccgtgattttgagaagctagtatttgtagcttcaaatgaaaatcccatcgtgtaactaaacgaaggttaaagaaatataagtgattgaatgcaattac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21928687 |
tgccgtgattttgagaagctagtatttgtagcttcaaatgaaaatctcattgtgtaactaaacgaaggttaaagaaatataagtgatttaatgcaattac |
21928786 |
T |
|
| Q |
207 |
atttgtcggtaacttatcgctattaaacacagaaacaccttcatgtaagtaaagta |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21928787 |
atttgtcggtaacttatcgctattaaacacagaaacaccttcctgtaagtaaagta |
21928842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2726 times since January 2019
Visitors: 4011