View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0640_low_9 (Length: 260)

Name: NF0640_low_9
Description: NF0640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0640_low_9
NF0640_low_9
[»] chr8 (13 HSPs)
chr8 (30-260)||(43270598-43270828)
chr8 (30-258)||(2170487-2170710)
chr8 (36-258)||(17699633-17699854)
chr8 (30-258)||(20824441-20824673)
chr8 (98-258)||(13879253-13879414)
chr8 (30-192)||(42177422-42177584)
chr8 (98-229)||(25090600-25090732)
chr8 (116-202)||(13200296-13200383)
chr8 (187-260)||(42177313-42177386)
chr8 (98-225)||(13396601-13396729)
chr8 (98-225)||(41665168-41665296)
chr8 (98-225)||(9922814-9922942)
chr8 (98-179)||(8300016-8300097)
[»] chr2 (7 HSPs)
chr2 (30-260)||(14439897-14440122)
chr2 (29-260)||(12645680-12645912)
chr2 (98-258)||(40176881-40177042)
chr2 (92-225)||(38604178-38604312)
chr2 (98-260)||(28252933-28253096)
chr2 (98-225)||(41207229-41207357)
chr2 (161-225)||(17764757-17764822)
[»] chr3 (14 HSPs)
chr3 (30-260)||(19890823-19891053)
chr3 (30-192)||(29523578-29523740)
chr3 (30-258)||(48569805-48570034)
chr3 (155-258)||(12342021-12342124)
chr3 (30-125)||(33496692-33496787)
chr3 (29-126)||(11203963-11204061)
chr3 (30-108)||(12342143-12342221)
chr3 (99-225)||(962962-963089)
chr3 (159-260)||(15312855-15312957)
chr3 (160-260)||(17097641-17097741)
chr3 (98-225)||(34332614-34332742)
chr3 (187-258)||(29523487-29523558)
chr3 (99-225)||(3141066-3141192)
chr3 (151-184)||(40415639-40415672)
[»] chr7 (9 HSPs)
chr7 (30-260)||(25619610-25619840)
chr7 (33-260)||(37254906-37255134)
chr7 (44-260)||(31422763-31422978)
chr7 (98-225)||(11277051-11277179)
chr7 (30-84)||(18532773-18532827)
chr7 (98-225)||(47877196-47877324)
chr7 (98-216)||(29968187-29968306)
chr7 (98-219)||(37919757-37919879)
chr7 (98-225)||(17720848-17720976)
[»] chr6 (11 HSPs)
chr6 (30-260)||(20882797-20883028)
chr6 (30-258)||(10577016-10577244)
chr6 (30-258)||(17573422-17573650)
chr6 (30-258)||(21629873-21630102)
chr6 (30-258)||(17606100-17606329)
chr6 (30-142)||(11462552-11462664)
chr6 (98-260)||(14372755-14372918)
chr6 (98-260)||(15958577-15958740)
chr6 (99-192)||(13937914-13938007)
chr6 (150-245)||(33185700-33185796)
chr6 (98-157)||(21168412-21168471)
[»] chr1 (5 HSPs)
chr1 (30-258)||(43388512-43388741)
chr1 (30-224)||(16917608-16917804)
chr1 (30-166)||(37191069-37191205)
chr1 (62-219)||(47622882-47623040)
chr1 (150-211)||(2491477-2491539)
[»] chr5 (11 HSPs)
chr5 (30-258)||(8299948-8300177)
chr5 (30-258)||(25857190-25857419)
chr5 (30-192)||(10776910-10777072)
chr5 (98-226)||(27795696-27795825)
chr5 (30-138)||(27767187-27767295)
chr5 (30-103)||(33385296-33385369)
chr5 (198-258)||(10777098-10777158)
chr5 (99-225)||(33169872-33169999)
chr5 (29-192)||(24408072-24408235)
chr5 (98-225)||(31641724-31641852)
chr5 (98-225)||(35983590-35983718)
[»] chr4 (12 HSPs)
chr4 (98-258)||(54482925-54483086)
chr4 (98-258)||(48312308-48312469)
chr4 (98-258)||(2821800-2821964)
chr4 (30-126)||(45472608-45472704)
chr4 (29-136)||(55725575-55725682)
chr4 (99-219)||(11587003-11587124)
chr4 (176-260)||(55725470-55725555)
chr4 (150-229)||(48242642-48242722)
chr4 (98-225)||(19755480-19755608)
chr4 (98-225)||(19784198-19784326)
chr4 (30-96)||(20002870-20002936)
chr4 (98-225)||(15740434-15740562)
[»] scaffold0472 (1 HSPs)
scaffold0472 (98-225)||(3465-3593)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 43270598 - 43270828
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  43270598 tcatatacaccacgaacagtataacctttaatatgatccggcaaccacaaccacctgtctgattctgtttcctgcaaagagactgttagtaataaatcca 43270697  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcacc 229  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43270698 tacactctactaccaggtcctccttccatacccataaacgacgacgccactgccatgccccccaccatcctccacccccaacaagaacatgttcctcacc 43270797  T
Q  230 ataattactttattgagagctaaatcatata 260  Q
    |||||||||||||||| ||||||||||||||    
T  43270798 ataattactttattgacagctaaatcatata 43270828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 2170487 - 2170710
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||||||||||| |||||||||||  |||||||||||||||||||||||||| ||| || || |||||||| |||||||||||||||||||||||||     
T  2170487 tcatatacaccacggacagtataaccagtaatctgatccggcaaccacaaccacatgtctgtttctgtttcctacaaagagactgttagtaataaatccc 2170586  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcacc 229  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||     || || |||| ||||| |||||||||| ||||    
T  2170587 tacactctactagcaattcctcctcccatacccataaacgacgacgccactgtcacgcccccc-----cccccccccctaacaaaaacatgttccgcacc 2170681  T
Q  230 ataattactttattgagagctaaatcata 258  Q
     ||||||||||||||| || |||||||||    
T  2170682 gtaattactttattgacagttaaatcata 2170710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 36 - 258
Target Start/End: Original strand, 17699633 - 17699854
Alignment:
Q  36 acaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatccatacact 135  Q
    ||||||||||||||||||||   |||||||||||||| |||||||||||||| || || | ||||||||||||||| ||| |||| ||||||| ||||||    
T  17699633 acaccacgaacagtataaccagaaatctgatccggcatccacaaccacctgtctgtttctatttcctgcaaagagattgtcagta-taaatccctacact 17699731  T
Q  136 ctactaccaggtcctcctcccatacccataaacgacgacgccactgccacg-ccccccaccatcctccacccccaacaagaacatgttcctcaccataat 234  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||| || |||||| ||||||||| |||||||||| ||||  |||    
T  17699732 ctactagcagttcctcctcccatacccataaacgacgacgccactgccacgcccccccatcaacctcca-ccccaacaaaaacatgttccgcaccgaaat 17699830  T
Q  235 tactttattgagagctaaatcata 258  Q
     | |||||||| || |||||||||    
T  17699831 aattttattgacagttaaatcata 17699854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 20824441 - 20824673
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||| ||||| |||||||||||||   |||||||||||||||||||| ||||||||  | || || ||||||||||| |||||| ||||||||||||     
T  20824441 tcatatgcaccatgaacagtataaccagaaatctgatccggcaaccacatccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccc 20824540  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgccccccacc-atc---ctccacccccaacaagaacatgttcct 225  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||||||| ||||||||||| || |||   ||||||||||||||| |||||||||      
T  20824541 tacactctactaacaattcctcctcccatacccataaacgacgacgccactaccacgccccccccccatctccctccacccccaacaaaaacatgttctg 20824640  T
Q  226 caccataattactttattgagagctaaatcata 258  Q
    ||   |||| |||||||||| ||||||||||||    
T  20824641 cattgtaataactttattgacagctaaatcata 20824673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 98 - 258
Target Start/End: Complemental strand, 13879414 - 13879253
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgc-cccccacca 196  Q
    |||||||||||||||||||||||||||| || |||||||  |||||| |||||||||||| |||||||| || ||||||||||||||||| |||||||||    
T  13879414 ttcctgcaaagagactgttagtaataaagccctacactcctctaccaagtcctcctcccacacccataaccggcgacgccactgccacgctcccccacca 13879315  T
Q  197 tcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcata 258  Q
    ||||||||||| ||||||||||||||||||||| | |||  ||||| || |||||| |||||    
T  13879314 tcctccaccccgaacaagaacatgttcctcaccgtgattgatttatcgatagctaagtcata 13879253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 30 - 192
Target Start/End: Complemental strand, 42177584 - 42177422
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||||||||||| |||||||||||| ||||||||||| | ||| ||| |||| |||||| || || |||||||||||||||| ||||||||||||||     
T  42177584 tcatatacaccacgtacagtataacctctaatctgatccagtaacaacatccacatgtttgtttctgattcctgcaaagagactattagtaataaatccc 42177485  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcccccc 192  Q
    |||||||| ||||| |||||||| |||| |||||||||||| | |||||||||||||| ||||    
T  42177484 tacactcttctaccgggtcctccacccacacccataaacgatgccgccactgccacgcacccc 42177422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 229
Target Start/End: Original strand, 25090600 - 25090732
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgc-cccccacca 196  Q
    |||||||||||||||||||||||||||| || |||||||  ||||||  | ||||||||| ||| ||||||| ||||||||||||||||| |||||||||    
T  25090600 ttcctgcaaagagactgttagtaataaagccctacactcctctaccaatttctcctcccacaccaataaacggcgacgccactgccacgctcccccacca 25090699  T
Q  197 tcctccacccccaacaagaacatgttcctcacc 229  Q
    |||||||||||||||||||||||||||||||||    
T  25090700 tcctccacccccaacaagaacatgttcctcacc 25090732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 13200296 - 13200383
Alignment:
Q  116 tagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgc-cccccaccatcctcc 202  Q
    |||||||||||||||||||||  ||||||  ||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||    
T  13200296 tagtaataaatccatacactcctctaccaactcctcctcccacacccataaacgacgtcgccactgccacgctcccccaccctcctcc 13200383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 42177386 - 42177313
Alignment:
Q  187 ccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcatata 260  Q
    |||||| ||||||||||||| |||||||||||||||||||||| | ||||||||||||  ||||| ||||||||    
T  42177386 cccccccccatcctccaccctcaacaagaacatgttcctcaccgtgattactttattggcagctagatcatata 42177313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 13396601 - 13396729
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    |||||||||||| | ||||||||||||| || |||||||  ||||||  |||||||||||  |||| || || | ||||||| || ||||| |||||||     
T  13396601 ttcctgcaaagaaattgttagtaataaaaccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccaccc 13396700  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
     | |||||||||||||||||||| |||||    
T  13396701 acatccacccccaacaagaacatattcct 13396729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 41665296 - 41665168
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    |||||| ||||| ||||||||||||||| || |||||||  ||||||  |||||||||||  |||| || || | ||||||| || || || |||||||     
T  41665296 ttcctgtaaagaaactgttagtaataaaaccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacacctccccaccc 41665197  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
     | |||||||||||||||||||| |||||    
T  41665196 acatccacccccaacaagaacatattcct 41665168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 9922814 - 9922942
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    ||||||||| || ||||||||||||||| || || ||||  ||||||  || ||||||||  |||| || || | |||||||  | ||||| |||||||     
T  9922814 ttcctgcaatgaaactgttagtaataaagccctagactcctctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccaccg 9922913  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
     | ||||||||||||||||||||||||||    
T  9922914 acatccacccccaacaagaacatgttcct 9922942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 8300016 - 8300097
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccac 179  Q
    |||||||||||| ||||||||||| ||| || |||||||  ||||||  |||||||||||  |||| || || |||||||||    
T  8300016 ttcctgcaaagaaactgttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgccgacgccac 8300097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 14439897 - 14440122
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||      |||||||||||||||||||||||||||||||||    
T  14439897 tcatatacaccacgaacaatataacctttaatctgatccggcaaccacaaccacctgtctg------tttcctgcaaagagactgttagtaataaatcca 14439990  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactg-ccacgccccccaccatcctccacccccaacaagaacatgttcctcac 228  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||||| |||    
T  14439991 tacactctactaacaattcctcctcccatacccataaacgacgacgccactgcccccnccccccaccatcctccacccccaacaaaaacatgttccgcac 14440090  T
Q  229 cataattactttattgagagctaaatcatata 260  Q
    | ||||||||||||||| ||||||||||||||    
T  14440091 cgtaattactttattgacagctaaatcatata 14440122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 12645680 - 12645912
Alignment:
Q  29 atcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcc 128  Q
    |||||| ||||||||||||||||| |||  | |||||||| | ||||||||||||||||  | || ||||||||||||||||| ||||||||||||||||    
T  12645680 atcatacacaccacgaacagtatatcctccagtctgatccagtaaccacaaccacctgtcagtttctgtttcctgcaaagagattgttagtaataaatcc 12645779  T
Q  129 atacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgc-cccccaccatcctccacccccaacaagaacatgttcctca 227  Q
     |||||||  ||||||  ||||||| ||| |||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||| |    
T  12645780 ctacactcctctaccaaatcctccttccacacccataaacgacgtcgccactgccacgctcctccaccctcctccacccccaacaagaacatgttcctta 12645879  T
Q  228 ccataattactttattgagagctaaatcatata 260  Q
    |  | ||||||||||||| |||||| |||||||    
T  12645880 ctgtgattactttattgacagctaagtcatata 12645912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 98 - 258
Target Start/End: Original strand, 40176881 - 40177042
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgc-cccccacca 196  Q
    |||||||||||||||||||||||||||| || |||||||  |||||| |||||||||||| |||||||| || ||||||||||||||||| |||||||||    
T  40176881 ttcctgcaaagagactgttagtaataaagccctacactcctctaccaagtcctcctcccacacccataaccggcgacgccactgccacgctcccccacca 40176980  T
Q  197 tcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcata 258  Q
    ||||||||||||||||||||||| ||||||||| | |||  ||||||||  ||||| |||||    
T  40176981 tcctccacccccaacaagaacatcttcctcaccgtgattgatttattgatggctaagtcata 40177042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 38604312 - 38604178
Alignment:
Q  92 ttatgtttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgc-ccc 190  Q
    |||||||||||||||||| ||||| |||| ||||| | |||||||  |||||| ||| |||||||| |||||||||| |||  ||||||||||||| |||    
T  38604312 ttatgtttcctgcaaagaaactgtaagtactaaattcctacactcctctaccaagtcttcctcccacacccataaactacggtgccactgccacgcaccc 38604213  T
Q  191 ccaccatcctccacccccaacaagaacatgttcct 225  Q
    ||||||||||||||||||||||||| ||| |||||    
T  38604212 ccaccatcctccacccccaacaagagcatattcct 38604178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 260
Target Start/End: Original strand, 28252933 - 28253096
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    |||||||||| | ||||| ||||||||| || |||||||  |||| ||||| ||||||||| ||||||| ||||||||||||| ||||||| | ||||||    
T  28252933 ttcctgcaaaaaaactgtcagtaataaagccctacactcctctactaggtcatcctcccatgcccataaccgacgacgccactaccacgcctcaccacca 28253032  T
Q  197 tcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcatata 260  Q
     |||||||||||||||| |||||  |||| ||| | |||||||| ||||  || ||||||||||    
T  28253033 acctccacccccaacaaaaacatagtcctaaccgtgattactttgttgacggccaaatcatata 28253096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 41207229 - 41207357
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    ||||||||| || ||||| | ||||||| || |||||||  ||||||  || ||||||||| |||| || ||||||||||| ||| ||||| |||||||     
T  41207229 ttcctgcaaggaaactgtaaataataaaaccctacactcctctaccaactcttcctcccatgcccacaaccgacgacgccattgcaacgcctccccaccc 41207328  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
     | |||||||||||||||||||| |||||    
T  41207329 acatccacccccaacaagaacatattcct 41207357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 17764822 - 17764757
Alignment:
Q  161 ccataaacgacgacgccactgccacg-ccccccaccatcctccacccccaacaagaacatgttcct 225  Q
    |||||| ||||||||||||||||||| | |||||||  | |||||||| ||||||||||| |||||    
T  17764822 ccataagcgacgacgccactgccacgtctccccaccgacatccaccccaaacaagaacatattcct 17764757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 19890823 - 19891053
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    ||||||||||||||||||||||||||| ||||||||||||  ||||||| |||||||| || || |  |||||||||||||||||||||||||||||||     
T  19890823 tcatatacaccacgaacagtataacctctaatctgatccgataaccacatccacctgtctgtttctaattcctgcaaagagactgttagtaataaatccc 19890922  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcacc 229  Q
     ||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  19890923 cacactcttctaccaggtcctcctcccacacccataaatgacgtcgccactgccacgccccccaccatcctccacccccaaccagaacatgttcctcaca 19891022  T
Q  230 ataattactttattgagagctaaatcatata 260  Q
    || ||||||||||||| ||||| ||| ||||    
T  19891023 atgattactttattgacagctagatcgtata 19891053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 192
Target Start/End: Complemental strand, 29523740 - 29523578
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||||||||||| | || || | ||||||||||||  ||||| ||||||||||||     
T  29523740 tcatatacaccacgaacagtataaccagaaatctgatccgacaaccacaaccacctatctgtttctatttcctgcaaagtaactgtcagtaataaatccc 29523641  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcccccc 192  Q
    |||||||||||| ||  |||||||||||||||||||||| |||||||||||||||||||||||    
T  29523640 tacactctactagcaattcctcctcccatacccataaacaacgacgccactgccacgcccccc 29523578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 48570034 - 48569805
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||||| |||||||||||||| ||   |||| ||||||| ||||||| ||| ||||  |  |  | ||||||||||||||||||||||| |||| ||     
T  48570034 tcatataccccacgaacagtatagccaccaatcggatccggtaaccacacccatctgtcagtatcggattcctgcaaagagactgttagtagtaaagccc 48569935  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgc-cccccaccatcctccacccccaacaagaacatgttcctcac 228  Q
    |||||||  |||||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||    
T  48569934 tacactcctctaccaagtcctcctcccacacccataaacggcgacgccactgccacgctcccccaccatcctcaacccccaacaagaacatgttccttac 48569835  T
Q  229 cataattactttattgagagctaaatcata 258  Q
    | | ||| |||||||||  ||||| |||||    
T  48569834 cgtgattgctttattgacggctaagtcata 48569805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 12342124 - 12342021
Alignment:
Q  155 ccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaat 254  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| |||||||||  |||  |||| |||||| ||| ||||||||    
T  12342124 ccatacccataaacgacgacgccactgccacgccccccatcaccctccacacccaacaaaaacatgttctgcactgtaataactttagtgacagctaaat 12342025  T
Q  255 cata 258  Q
    ||||    
T  12342024 cata 12342021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 33496692 - 33496787
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaa 125  Q
    |||||||||||| |||||||||||||   ||||| ||||| ||||||||||||||||| || || ||||||||||||||||||||| |||||||||    
T  33496692 tcatatacaccatgaacagtataaccagaaatctaatccgacaaccacaaccacctgtctgtttctgtttcctgcaaagagactgtcagtaataaa 33496787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 11203963 - 11204061
Alignment:
Q  29 atcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagac-tgttagtaataaat 126  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||| |||||||| || || |||||||||||||| ||| ||| ||||||||||    
T  11203963 atcatatacaccacgaacagtataaccagaaatctgatccggcaaccacatccacctgtctgtttctgtttcctgcaaagtgacatgtcagtaataaat 11204061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 12342221 - 12342143
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaag 108  Q
    |||||||||||| |||||||||||||   ||||||||||||||||||||||||||| |||| || ||||||||||||||    
T  12342221 tcatatacaccatgaacagtataaccagaaatctgatccggcaaccacaaccacctatttgtttctgtttcctgcaaag 12342143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 225
Target Start/End: Complemental strand, 963089 - 962962
Alignment:
Q  99 tcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccaccat 197  Q
    ||||||||||  ||||| |||||||| ||| |||||||  ||||||  || |||||||| ||||| || || |||||||||||||||||| ||||||||     
T  963089 tcctgcaaagtaactgtaagtaataattccctacactcctctaccaattcttcctcccaaacccacaagcggcgacgccactgccacgcccccccaccaa 962990  T
Q  198 cctccacccccaacaagaacatgttcct 225  Q
    ||||||  ||||||  ||||||||||||    
T  962989 cctccaaacccaactggaacatgttcct 962962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 260
Target Start/End: Original strand, 15312855 - 15312957
Alignment:
Q  159 acccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcat 257  Q
    ||||| |||||||| ||||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||| | | |||||| |||| ||| || ||||    
T  15312855 acccacaaacgacggcgccactgccacgcctcccctccaacctccacacccaacaagaacatgttccttaccgtgactactttgttgacagccaattcat 15312954  T
Q  258 ata 260  Q
    |||    
T  15312955 ata 15312957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 17097741 - 17097641
Alignment:
Q  160 cccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcatat 259  Q
    |||| |||||||| ||||||| ||||||||||  ||| ||||||  |||||||||||||||||||| ||| | | |||||| |||| ||| |||||||||    
T  17097741 cccacaaacgacggcgccactaccacgccccctgccaacctccaaacccaacaagaacatgttccttaccgtgactactttgttgacagccaaatcatat 17097642  T
Q  260 a 260  Q
    |    
T  17097641 a 17097641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 34332742 - 34332614
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    |||||||||||| ||||||||||||||| || |||||||  ||||||  |||||||||||  |||| || || | ||||||| || ||||| |||||||     
T  34332742 ttcctgcaaagaaactgttagtaataaaaccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccaccc 34332643  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
       |||||||||||||||||||| |||||    
T  34332642 atgtccacccccaacaagaacatattcct 34332614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 29523558 - 29523487
Alignment:
Q  187 ccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcata 258  Q
    ||||||| || |||||||||||||||| |||||||||| |||  |||| |||||| ||| ||||||||||||    
T  29523558 ccccccatcaccctccacccccaacaaaaacatgttccgcactgtaataactttagtgacagctaaatcata 29523487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 3141066 - 3141192
Alignment:
Q  99 tcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgccccccaccatc 198  Q
    ||||||||||  ||||| |||||||  ||| |||||||  ||||||  || |||||||| || || || || | |||||||||||||  ||||||||| |    
T  3141066 tcctgcaaagtaactgtaagtaatagttccctacactcctctaccaactcttcctcccaaactcacaagcggcaacgccactgccacatcccccaccaac 3141165  T
Q  199 ctccacccccaacaagaacatgttcct 225  Q
    |||||  ||||||  ||||||||||||    
T  3141166 ctccaaacccaactggaacatgttcct 3141192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 40415639 - 40415672
Alignment:
Q  151 cctcccatacccataaacgacgacgccactgcca 184  Q
    |||||||| |||||||||||||||||||||||||    
T  40415639 cctcccatgcccataaacgacgacgccactgcca 40415672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 25619610 - 25619840
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||||||||||  ||| |||||||| ||||||||||||| ||||||| |||||||| || || || ||||||||||||| |||||||||||||||||     
T  25619610 tcatatacaccacagacaatataacctctaatctgatccggaaaccacatccacctgtctgtttctgattcctgcaaagagtctgttagtaataaatcct 25619709  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcacc 229  Q
    |||||||| ||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25619710 tacactcttctaccaggtcctcctcccacacccataaacgatgccgccactaccacgccccccaccatcctccacccccaacaagaacatgttcctcacc 25619809  T
Q  230 ataattactttattgagagctaaatcatata 260  Q
     | ||||||||||||| | ||| ||||||||    
T  25619810 gtgattactttattgacaactagatcatata 25619840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 33 - 260
Target Start/End: Original strand, 37254906 - 37255134
Alignment:
Q  33 tatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatccatac 132  Q
    |||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||| || || |  |||||||||||||  |||||||||||||||| |||    
T  37254906 tatacaccacgaacaggatagcctctaatctgatccggtaaccacaaccacctgtctgtttctaattcctgcaaagagtttgttagtaataaatccctac 37255005  T
Q  133 actctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctcca-cccccaacaagaacatgttcctcaccat 231  Q
    ||||| |||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  37255006 actcttctaccaagtcctcctcccacacccataaccgacggcgccactgccacgccccccaccatcctccaccccccaacaagaacatgttcctcaccgt 37255105  T
Q  232 aattactttattgagagctaaatcatata 260  Q
     ||||||||||||| ||||||||||||||    
T  37255106 gattactttattgacagctaaatcatata 37255134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 44 - 260
Target Start/End: Original strand, 31422763 - 31422978
Alignment:
Q  44 aacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatccatacactctactacc 143  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||| | || || ||||||||||||| ||||||||||||||| |||||||||  |||||    
T  31422763 aacagtatagccttcaatctgatccggtaaccacaaccacctgttagtttttgattcctgcaaagagtctgttagtaataaattcatacactcctctacc 31422862  T
Q  144 aggtcctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttatt 243  Q
    | ||| |||||||| ||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| ||||||||||||  | |||||||||||    
T  31422863 aagtcatcctcccacacccataaacgacgatgccactgccacg-cccacaccatcctccacccccaacaagagcatgttcctcactgtgattactttatt 31422961  T
Q  244 gagagctaaatcatata 260  Q
    || |||||| |||||||    
T  31422962 gacagctaagtcatata 31422978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 11277179 - 11277051
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    |||||||||||| |||||||| |||||| || |||||||  ||||||  |||||||||||  |||| || || | ||||||| || ||||| |||||||     
T  11277179 ttcctgcaaagaaactgttagcaataaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccaccc 11277080  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
     | |||||||||||||||||||| |||||    
T  11277079 acatccacccccaacaagaacatattcct 11277051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 18532773 - 18532827
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacc 84  Q
    |||||||||||||||||| |||||||   ||||||||||||||||||||||||||    
T  18532773 tcatatacaccacgaacaatataaccagaaatctgatccggcaaccacaaccacc 18532827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 47877196 - 47877324
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    ||||||||| || ||||||||||||||| ||  ||||||  ||||||  || ||||||||  |||| || || | ||||||| || ||||| |||||||     
T  47877196 ttcctgcaaggaaactgttagtaataaaaccccacactcctctaccaactcttcctcccaagcccacaaccgcctacgccaccgcaacgcctccccaccc 47877295  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
     | |||||||||||||||||||| |||||    
T  47877296 acgtccacccccaacaagaacatattcct 47877324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 29968187 - 29968306
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    |||||||||||| |||||||| |||||| || |||||||  ||||||  |||||||| ||  ||||||| |  | ||||||| || ||||| |||||||     
T  29968187 ttcctgcaaagaaactgttagcaataaagccctacactcctctaccaattcctcctctcaagcccataacctcctacgccaccgcaacgcctccccaccc 29968286  T
Q  197 tcctccacccccaacaagaa 216  Q
     | |||||||||||||||||    
T  29968287 acatccacccccaacaagaa 29968306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 37919757 - 37919879
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccac-gccccccacca 196  Q
    |||||||||||| ||||||||||||||| |  |||||||  ||||||  | |||||||||  |||| || || | ||||||| || ||  |||||||||     
T  37919757 ttcctgcaaagaaactgttagtaataaaactctacactcctctaccaacttctcctcccaagcccacaaccgcctacgccaccgcaacacccccccaccc 37919856  T
Q  197 tcctccacccccaacaagaacat 219  Q
     | ||||||||||||||||||||    
T  37919857 acatccacccccaacaagaacat 37919879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 17720848 - 17720976
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    ||||||||| || ||||||||||||||| || || ||||  ||||||  || ||||||||  |||| || || | |||||||  | ||||| |||||||     
T  17720848 ttcctgcaatgaaactgttagtaataaagccntaaactcctctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccaccg 17720947  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
     | |||||||||||||||| |||||||||    
T  17720948 acatccacccccaacaagatcatgttcct 17720976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 20883028 - 20882797
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||||||||||||||| |||| ||| ||||||||||||| |||||||||||||||| || || || |||||||||||||||||||||||||||||||     
T  20883028 tcatatacaccacgaacaatatagcctctaatctgatccggtaaccacaaccacctgtctgtttctgattcctgcaaagagactgttagtaataaatccc 20882929  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacc-cccaacaagaacatgttcctcac 228  Q
    ||||| || |||||||||||||||||||  ||||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  20882928 tacacccttctaccaggtcctcctcccacgcccataaacgacgacgccaatgccacaccccccaccatcctccacctctcaacaagaacatgttcctcac 20882829  T
Q  229 cataattactttattgagagctaaatcatata 260  Q
     || ||||||||||| | | ||||||||||||    
T  20882828 aatgattactttattaacaactaaatcatata 20882797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 10577244 - 10577016
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    ||||||||||||| ||||||||||||   ||| ||||||||||||||||||||||||| || || ||||||||||||||||||||| ||||||||||||     
T  10577244 tcatatacaccacaaacagtataaccagaaatatgatccggcaaccacaaccacctgtctgtttctgtttcctgcaaagagactgtcagtaataaatccc 10577145  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcacc 229  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||| |||     
T  10577144 tacactctactagcaattcctcctcccatacccataaacgacgacgccactgccacgccccccatcaccctccacccccagcaaaaacatgttccgcact 10577045  T
Q  230 ataattactttattgagagctaaatcata 258  Q
     |||| |||||||||| || |||||||||    
T  10577044 gtaataactttattgacagttaaatcata 10577016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 17573650 - 17573422
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||| ||| |||||||||||||||   |||||||||||||||||||| ||||||||  | || || ||||||||||| |||||| ||||||||||||     
T  17573650 tcatatgcacaacgaacagtataaccagaaatctgatccggcaaccacatccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccc 17573551  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcacc 229  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||||||||||||| ||||||| |  |||||||||||||||| |||||||||| ||      
T  17573550 tacactctactaacaattcctcctcccatacccataaacgacgacgccactgccacaccccccatctccctccacccccaacaaaaacatgttccgcatt 17573451  T
Q  230 ataattactttattgagagctaaatcata 258  Q
     |||| |||||||||| ||||||||||||    
T  17573450 gtaataactttattgacagctaaatcata 17573422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 21630102 - 21629873
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    ||||||||||||||||||||||||||   |||||||||||||||||| | |||||||| || || ||||||||||||||  ||||| ||||||||||||     
T  21630102 tcatatacaccacgaacagtataaccagaaatctgatccggcaaccatatccacctgtctgtttctgtttcctgcaaagtaactgtcagtaataaatccc 21630003  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcac 228  Q
    |||||||||||| ||  |||||||||||||||||||||||||  || |||||||||||| ||||| || |||||||||||||||| |||||||||| |||    
T  21630002 tacactctactaacaattcctcctcccatacccataaacgacaccgtcactgccacgcccccccatcaccctccacccccaacaaaaacatgttccgcac 21629903  T
Q  229 cataattactttattgagagctaaatcata 258  Q
       ||| |||||||||| ||||||||||||    
T  21629902 tgaaataactttattgacagctaaatcata 21629873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 17606329 - 17606100
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||  | || || ||||||||||| || ||| | ||||||||||     
T  17606329 tcatatacaccacgaacagtataaccataaatctgatccggcaaccacatccacctgtcagtttctgattcctgcaaagtgaatgtcaataataaatccc 17606230  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcac 228  Q
    ||||||||||||  |  |||||||||||||||||||||||||  || |||||||||||| ||||| || |||||||||||||||| |||||||||| |||    
T  17606229 tacactctactaaaaattcctcctcccatacccataaacgacaccgtcactgccacgcccccccatcaccctccacccccaacaaaaacatgttccgcac 17606130  T
Q  229 cataattactttattgagagctaaatcata 258  Q
       ||| |||||||||| ||||||||||||    
T  17606129 tgaaataactttattgacagctaaatcata 17606100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 11462552 - 11462664
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||||||||||||||| |||| | | |||| |||||||| ||||||||||||||||||| || || |||||||||||||||||||||||||||||||     
T  11462552 tcatatacaccacgaacaatatagcatctaatatgatccggtaaccacaaccacctgtttgtttttgattcctgcaaagagactgttagtaataaatccc 11462651  T
Q  130 tacactctactac 142  Q
    |||||||| ||||    
T  11462652 tacactcttctac 11462664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 14372918 - 14372755
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    |||||||||||| ||||| ||||||||| || |||||||  |||| |||||||| |||||  ||||||| ||| ||||||||| ||||||| | ||||||    
T  14372918 ttcctgcaaagaaactgtcagtaataaagccctacactcctctactaggtcctcgtcccacgcccataaccgatgacgccacttccacgcctcaccacca 14372819  T
Q  197 tcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcatata 260  Q
     ||||||||||||| || ||||| || || ||| | |||||||| ||||  || ||||||||||    
T  14372818 acctccacccccaataaaaacatatttctaaccgtgattactttgttgacggccaaatcatata 14372755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 15958740 - 15958577
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    |||||||||||| ||||| ||||||||| || |||| ||  ||| || ||  |||| |||  ||||||||||||||||| ||||||||||| ||||||||    
T  15958740 ttcctgcaaagaaactgtcagtaataaaaccctacattcctctaacaagttttcctaccacgcccataaacgacgacgcaactgccacgcctccccacca 15958641  T
Q  197 tcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcatata 260  Q
     | |||||| ||| ||||||||| | ||| ||  | |||||||| |||| ||| ||||||||||    
T  15958640 acatccacctccagcaagaacatatgcctaactgtgattactttgttgacagccaaatcatata 15958577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 13937914 - 13938007
Alignment:
Q  99 tcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcccccc 192  Q
    ||||||||||  ||||| |||||||| ||| |||||||  ||||||  || |||||||| ||||| || || |||||||||||||||| |||||    
T  13937914 tcctgcaaagtaactgtaagtaataattccctacactcctctaccaactcttcctcccaaacccacaagcggcgacgccactgccacgaccccc 13938007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 33185700 - 33185796
Alignment:
Q  150 tcctcccatacccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattga 245  Q
    |||||||||  ||| ||||| ||||| |||||||||||| ||||||||||||||   ||||||| || ||||||||| ||| | |||||||| ||||    
T  33185700 tcctcccatgtccacaaacggcgacgtcactgccacgcctccccaccatcctcccaacccaacaggagcatgttcctaaccgtgattactttgttga 33185796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 21168412 - 21168471
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctccca 157  Q
    |||||||||||| ||||||||||||||| || |||||||  ||||||  |||||||||||    
T  21168412 ttcctgcaaagaaactgttagtaataaagccctacactcctctaccaactcctcctccca 21168471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 43388512 - 43388741
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||| |||||||| || || |||||||||||||| |||||| ||||||||||||     
T  43388512 tcatatacaccacgaacagtataaccagaaatctgatccggcaaccacatccacctgtctgtttctgtttcctgcaaagtgactgtcagtaataaatccc 43388611  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacg-ccccccaccatcctccacccccaacaagaacatgttcctcac 228  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||| |||| ||||| ||||||| || |||||||||||||||| ||||||||||||||    
T  43388612 tacactctactagcaattcctcctcccatacccataaacgacgacgtcactaccacgcccccccatcaccctccacccccaacaaaaacatgttcctcac 43388711  T
Q  229 cataattactttattgagagctaaatcata 258  Q
       ||| |||||| ||| ||||||||||||    
T  43388712 tgaaataactttagtgacagctaaatcata 43388741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 16917804 - 16917608
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||| |||||||||||||||||||   |||||||||||||||||||| ||||||||  | || || ||||||||||| |||||| ||||||||||||     
T  16917804 tcatatgcaccacgaacagtataaccagaaatctgatccggcaaccacatccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccc 16917705  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgccccccaccat---cctccacccccaacaagaacatgttcc 224  Q
    |||||||||||| ||  |||| ||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||| ||||||||||    
T  16917704 tacactctactaacaattccttctcccatacccataaacgacgacgccactgccacgcccccc-ccatctccctccacccccaacaaaaacatgttcc 16917608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 37191205 - 37191069
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||||||||||  ||| |||||||| ||||||||||||| |||||||  ||||| | || || || |||||||||| |||||||||||||||||| |     
T  37191205 tcatatacaccacagacattataacctctaatctgatccggtaaccacattcacctatctgtttttgattcctgcaaaaagactgttagtaataaattct 37191106  T
Q  130 tacactctactaccaggtcctcctcccatacccataa 166  Q
    |||||||| | || |||||||||||||| ||||||||    
T  37191105 tacactcttccacgaggtcctcctcccacacccataa 37191069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 47623040 - 47622882
Alignment:
Q  62 ctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacc 161  Q
    ||||||||  |||||||||||||| | |||  | | |||||||||| |  |||| ||||||||| || |||||||  |||||||||||||||||||  ||    
T  47623040 ctgatccgataaccacaaccacctatctgacaaagattcctgcaaaaaagctgtcagtaataaagccttacactcctctaccaggtcctcctcccacgcc 47622941  T
Q  162 cataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacat 219  Q
    ||||| ||||||||||||| |||| || | |||||| |||||||||||||||| |||||    
T  47622940 cataaccgacgacgccactaccacacctcaccaccaacctccacccccaacaaaaacat 47622882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 2491477 - 2491539
Alignment:
Q  150 tcctcccatacccataaacgacgacgccactgccacg-ccccccaccatcctccacccccaac 211  Q
    ||||||||  |||| |||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  2491477 tcctcccaagcccacaaacgacgacgccactgccacgcccccccaccagcctccacacccaac 2491539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 8300177 - 8299948
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||| |||||||||||||||||||   |||||||||||||||||||| ||||||||  | || || ||||||||||| |||||| ||||||||||||     
T  8300177 tcatatgcaccacgaacagtataaccagaaatctgatccggcaaccacatccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccc 8300078  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcac 228  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||| |||||||||| |||    
T  8300077 tacactctactaacaattcctcctcccatacccataaacgacgacgccactgccacgcccccccatctccctccacccccaacaaaaacatgttccgcac 8299978  T
Q  229 cataattactttattgagagctaaatcata 258  Q
      |||| || ||||||| ||||||||||||    
T  8299977 tgtaataacattattgacagctaaatcata 8299948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 25857419 - 25857190
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||| |||||||||||||||||||   ||||||||||||||| |||| ||||||||  | || || ||||||||||| |||||| ||||||||||||     
T  25857419 tcatatgcaccacgaacagtataaccagaaatctgatccggcaatcacatccacctgtcagtttctgattcctgcaaagtgactgtcagtaataaatccc 25857320  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcac 228  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||| || ||||||| |||    
T  25857319 tacactctactaacaattcctcctcccatacccataaacgacgacgccactgccacgcccccccatctccctccacccccaacaaaaatatgttccgcac 25857220  T
Q  229 cataattactttattgagagctaaatcata 258  Q
      |||| || ||||||| ||||||||||||    
T  25857219 tgtaataacattattgacagctaaatcata 25857190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 10776910 - 10777072
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    |||||||||||||| |||||||||||   ||||||||||||||||||||||||||||| || ||  ||||||| |||||||| ||| |||||||||||      
T  10776910 tcatatacaccacggacagtataaccaaaaatctgatccggcaaccacaaccacctgtctgtttccgtttcctacaaagagattgtcagtaataaatctc 10777009  T
Q  130 tacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcccccc 192  Q
    |||||||||||| ||| |||||||||||||||||||||| |||||||| ||||||||||||||    
T  10777010 tacactctactagcagttcctcctcccatacccataaaccacgacgccgctgccacgcccccc 10777072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 226
Target Start/End: Original strand, 27795696 - 27795825
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgc-cccccacca 196  Q
    ||||| |||||| ||||||||||||||| || |||||||  |||||| |||||||||||| |||||||| || ||||||||||||||||| |||||||||    
T  27795696 ttcctccaaagaaactgttagtaataaagccctacactcctctaccaagtcctcctcccacacccataatcggcgacgccactgccacgctcccccacca 27795795  T
Q  197 tcctccacccccaacaagaacatgttcctc 226  Q
    ||||||||||| ||||||||||||||||||    
T  27795796 tcctccacccctaacaagaacatgttcctc 27795825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 27767187 - 27767295
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcca 129  Q
    ||||||||||||||||||||||||||   |||||||||||||||||| | |||||||| || || ||||||||||||||  ||||| ||||| ||||||     
T  27767187 tcatatacaccacgaacagtataaccagaaatctgatccggcaaccatatccacctgtctgtttctgtttcctgcaaagtaactgtcagtaagaaatccc 27767286  T
Q  130 tacactcta 138  Q
    |||||||||    
T  27767287 tacactcta 27767295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 33385369 - 33385296
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctg 103  Q
    ||||||||||||||||||||||||||   ||||||||| |||| |||||||||||||| || || |||||||||    
T  33385369 tcatatacaccacgaacagtataaccagaaatctgatctggcatccacaaccacctgtctgtttctgtttcctg 33385296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 10777098 - 10777158
Alignment:
Q  198 cctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcata 258  Q
    ||||||||||||||||||||||||||| |||| |||| | |||||||| ||||||||||||    
T  10777098 cctccacccccaacaagaacatgttccgcaccgtaataattttattgacagctaaatcata 10777158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 33169872 - 33169999
Alignment:
Q  99 tcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacg-ccccccaccat 197  Q
    ||||||||||  ||||| |||||||| ||| |||||||  ||||||  || |||||||| ||||| || || || ||||||||||||| ||||||||||     
T  33169872 tcctgcaaagtaactgtaagtaataattccctacactcctctaccaactcgtcctcccaaacccacaagcggcgtcgccactgccacgcccccccaccaa 33169971  T
Q  198 cctccacccccaacaagaacatgttcct 225  Q
    ||||||  ||||||  ||||||||||||    
T  33169972 cctccaaacccaactggaacatgttcct 33169999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 24408072 - 24408235
Alignment:
Q  29 atcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcc 128  Q
    |||||| ||||||||||| ||||| ||   |||||||||||| ||||| | ||||||||  ||  | |  ||||||||||  ||||| |||||||  |||    
T  24408072 atcatacacaccacgaaccgtatacccaccaatctgatccggtaaccaaagccacctgtcagaagaggaatcctgcaaagtaactgtaagtaatagttcc 24408171  T
Q  129 atacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcccccc 192  Q
     |||||||  ||||||  || ||||||||  |||| || ||||||||||||| |||||||||||    
T  24408172 ctacactcctctaccaactcttcctcccaagcccacaagcgacgacgccactaccacgcccccc 24408235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 31641724 - 31641852
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    ||||||||| || ||||||||||||||| || || ||||  ||||||  || ||||||||  |||| || || | |||||||  | ||||| |||||||     
T  31641724 ttcctgcaatgaaactgttagtaataaagccctaaactcctctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccaccg 31641823  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
     |||||||||||| |||||||||||||||    
T  31641824 acctccacccccatcaagaacatgttcct 31641852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 35983718 - 35983590
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    |||||| || || ||||||||||||||| || || ||||  ||||||  ||||||||| |  |||| || || | |||||||  | ||||| |||||||     
T  35983718 ttcctgtaatgaaactgttagtaataaagccctaaactcctctaccaactcctcctcctaagcccacaaccgcctacgccacctcaacgcctccccaccc 35983619  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
    || |||||||||||||||||||| |||||    
T  35983618 tcatccacccccaacaagaacatattcct 35983590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 98 - 258
Target Start/End: Complemental strand, 54483086 - 54482925
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgc-cccccacca 196  Q
    |||||||||||||||||||||||||||| || |||||||  ||||||  ||||||||||| |||||||| || ||||||||||||||||| |||||||||    
T  54483086 ttcctgcaaagagactgttagtaataaacccctacactcctctaccaaatcctcctcccacacccataaccggcgacgccactgccacgctcccccacca 54482987  T
Q  197 tcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcata 258  Q
    ||||||||||||||||||||||||||||||||| |||||  ||||||||  ||||| |||||    
T  54482986 tcctccacccccaacaagaacatgttcctcaccgtaattgatttattgatggctaagtcata 54482925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 98 - 258
Target Start/End: Original strand, 48312308 - 48312469
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacg-ccccccacca 196  Q
    |||||||||| ||||||||||||||||| || |||||||  |||||| ||||||||| || ||| |||| || |||||||||||||||| ||||||||||    
T  48312308 ttcctgcaaatagactgttagtaataaagccctacactcctctaccaagtcctcctcacacaccaataaccggcgacgccactgccacgcccccccacca 48312407  T
Q  197 tcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcata 258  Q
    ||||||||||||||||||||||||||||||||| | |||  ||||||||  ||||| |||||    
T  48312408 tcctccacccccaacaagaacatgttcctcaccgtgattgatttattgatggctaagtcata 48312469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 258
Target Start/End: Complemental strand, 2821964 - 2821800
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactacca---ggtcctcctcccatacccataaacgacgacgccactgccacgc-ccccca 193  Q
    ||||||||||||||||||||||| |||| || |||||||  ||||||   ||||||||||||| |||||||| || |||||||||  |||||| ||||||    
T  2821964 ttcctgcaaagagactgttagtattaaagccctacactcctctaccaattggtcctcctcccacacccataagcggcgacgccaccaccacgctccccca 2821865  T
Q  194 ccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcata 258  Q
    |||||||||||||||||||||||||||||||| ||| | ||| |||||||||  ||||| |||||    
T  2821864 ccatcctccacccccaacaagaacatgttccttaccgtgattgctttattgatggctaagtcata 2821800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 45472704 - 45472608
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaat 126  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||| |||||||| || || |||||||||||||| || ||| ||||||||||    
T  45472704 tcatatacaccacgaacagtataaccagaaatctgatccggcaaccacatccacctgtctgtttctgtttcctgcaaagtgattgtcagtaataaat 45472608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 55725682 - 55725575
Alignment:
Q  29 atcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatgtttcctgcaaagagactgttagtaataaatcc 128  Q
    |||||| |||||| |||||||||| |||  | |||||||||| ||||||||||||||||  | || ||||||||||||||||| |||||||||||||||     
T  55725682 atcatacacaccatgaacagtatatcctccagtctgatccggtaaccacaaccacctgtcagtttctgtttcctgcaaagagattgttagtaataaatcg 55725583  T
Q  129 atacactc 136  Q
     |||||||    
T  55725582 ctacactc 55725575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 11587124 - 11587003
Alignment:
Q  99 tcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccaccat 197  Q
    ||||||||||| ||||| ||||||||| || |||| ||  |||  |||| |||||| || |||||||||||||| ||||||||||||||| ||| ||||     
T  11587124 tcctgcaaagaaactgtcagtaataaagccctacattcctctaataggttctcctctcacacccataaacgacggcgccactgccacgcctccctaccaa 11587025  T
Q  198 cctccacccccaacaagaacat 219  Q
    | |||||||||||||| |||||    
T  11587024 catccacccccaacaataacat 11587003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 260
Target Start/End: Complemental strand, 55725555 - 55725470
Alignment:
Q  176 ccactgccacgcccc-ccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcatata 260  Q
    |||||||||||| || ||||| ||||||||||||||||||||||||||||| ||  | ||||||||||||| |||||| |||||||    
T  55725555 ccactgccacgctccgccaccctcctccacccccaacaagaacatgttccttactgtgattactttattgacagctaagtcatata 55725470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 48242642 - 48242722
Alignment:
Q  150 tcctcccatacccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcacc 229  Q
    |||||||| ||||| |||||| | ||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||    
T  48242642 tcctcccaaacccacaaacgatgtcgccactgccacgcctccccgccaacctccacacccaacaagaacatgttcctcacc 48242722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 19755480 - 19755608
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    |||||||||||| ||| ||||||||||| || |||||||  ||||||  ||||||||| |  |||| || || | ||||||| || ||||| |||||||     
T  19755480 ttcctgcaaagaaactattagtaataaaaccctacactcctctaccaactcctcctcctaagcccacaaccgcctacgccaccgcaacgcctccccaccc 19755579  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
     | |||||||||||||||||||| |||||    
T  19755580 acatccacccccaacaagaacatattcct 19755608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 19784326 - 19784198
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    |||||||||||| ||| ||||||||||| || |||||||  ||||||  ||||||||| |  |||| || || | ||||||| || ||||| |||||||     
T  19784326 ttcctgcaaagaaactattagtaataaaaccctacactcctctaccaactcctcctcctaagcccacaaccgcctacgccaccgcaacgcctccccaccc 19784227  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
     | |||||||||||||||||||| |||||    
T  19784226 acatccacccccaacaagaacatattcct 19784198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 20002870 - 20002936
Alignment:
Q  30 tcatatacaccacgaacagtataacctttaatctgatccggcaaccacaaccacctgtttgattatg 96  Q
    ||||| ||||||||||||||||| ||| |||||||||  || |||||||||||||||| || |||||    
T  20002870 tcataaacaccacgaacagtatagcctctaatctgatttggtaaccacaaccacctgtctgtttatg 20002936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 15740434 - 15740562
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    |||||||||||| ||||||||||||||| || |||||||  ||||||  |||||||||||  |||| || || | | |||||||| ||||| |||| ||     
T  15740434 ttcctgcaaagaaactgttagtaataaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctatgccactgcaacgcctcccctccc 15740533  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
     | || |||||||||||||| || |||||    
T  15740534 acgtctacccccaacaagaatatattcct 15740562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 3465 - 3593
Alignment:
Q  98 ttcctgcaaagagactgttagtaataaatccatacactctactaccaggtcctcctcccatacccataaacgacgacgccactgccacgcc-ccccacca 196  Q
    |||||| ||||| ||||||||||||||| || |||||||  ||||||  |||||||||||  |||| || |  | ||||||| || ||||| |||||||     
T  3465 ttcctgtaaagaaactgttagtaataaagccctacactcctctaccaactcctcctcccaggcccacaacctcctacgccaccgcaacgcctccccaccc 3564  T
Q  197 tcctccacccccaacaagaacatgttcct 225  Q
     | |||||||||||||||||||| |||||    
T  3565 acatccacccccaacaagaacatattcct 3593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2731 times since January 2019
Visitors: 4011