View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0641_high_13 (Length: 375)

Name: NF0641_high_13
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0641_high_13
NF0641_high_13
[»] chr3 (11 HSPs)
chr3 (17-280)||(27376428-27376694)
chr3 (1-277)||(12146248-12146524)
chr3 (34-272)||(27347643-27347878)
chr3 (117-277)||(27392106-27392263)
chr3 (144-278)||(18026367-18026498)
chr3 (117-246)||(26627750-26627878)
chr3 (184-277)||(27460983-27461076)
chr3 (153-277)||(17746079-17746200)
chr3 (153-277)||(19047399-19047520)
chr3 (183-211)||(26114898-26114926)
chr3 (158-214)||(26142185-26142241)
[»] scaffold0043 (1 HSPs)
scaffold0043 (34-277)||(54511-54754)
[»] chr2 (1 HSPs)
chr2 (117-280)||(22391350-22391513)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 27376694 - 27376428
Alignment:
Q  17 aattttttacagccaaaatgtaaaaatattgggcaaagtctgtacctgagatataatcttctatgttatttg---agtcttctgttattgcgttagtcag 113  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  27376694 aattatttacagccaaaatgtaaaaatattggacaaagtctgtacctgagatataatcttctatgttatttctaaagtcttctgttattgcgttagtcag 27376595  T
Q  114 atcagagagttcttgacaattttggacaatacgatttggtacagcctgaaaatgaatttcttgagtcttgcagaggcttggtaggttgacaaatgctaca 213  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||    
T  27376594 atcagagagttcttgacaatttttgacaatacgattttgtacagcctgaaaatgaattccttgagtctggcagagacttggtaggttgacaaatgctaca 27376495  T
Q  214 atatttagatttggcatattgacattctgatcaccttcttcacatacaaatatttcctctagcttat 280  Q
    |  |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  27376494 agttttagatttggcatattgactttctcatcaccttcttcacatacaaatatttcctctagcttat 27376428  T

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Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 12146524 - 12146248
Alignment:
Q  1 atactgtacgatatgcaattttttacagccaaaatgtaaaaatattgggcaaagtctgtacctgagatataatc--ttctatgttat-ttgagtcttctg 97  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||   || | | || | || ||  |||||    
T  12146524 atactgtatgatatgctattatttacagccaaaatgtaaaaatattggacaaagtctgtacctgagatataatgaattgtgtattctcttaagaattctg 12146425  T
Q  98 ttattgcgttagtcagatcagagagttcttgacaattttggacaatacgatttggtacagcctgaaaatgaatttcttgagtcttgcagaggcttggtag 197  Q
    |||||||||||||||||   |||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||    
T  12146424 ttattgcgttagtcaga---gagagttcttgacaattttggataatacgattttgtacagcctgaaaatgaattccttgagtctggcagagacttggtag 12146328  T
Q  198 gttgacaaatgctacaatatttagatttggcatattgacattctgatcaccttcttcacatacaaatatttcctctagct 277  Q
    |||||||||||||||||  |  || ||||| |||||||| |||| |||||||||||||||||||||||||||||||||||    
T  12146327 gttgacaaatgctacaaattccagttttggaatattgactttctcatcaccttcttcacatacaaatatttcctctagct 12146248  T

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Target: chr3; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 34 - 272
Target Start/End: Complemental strand, 27347878 - 27347643
Alignment:
Q  34 atgtaaaaatattgggcaaagtctgtacctgagatataatcttctatgttatttg---agtcttctgttattgcgttagtcagatcagagagttcttgac 130  Q
    ||||||||||||||| ||||||||||||||||||||||||| | | ||||||||    ||| ||||||||||||||||||||||   |||||||||||||    
T  27347878 atgtaaaaatattggacaaagtctgtacctgagatataatcatatgtgttatttctaaagtgttctgttattgcgttagtcaga---gagagttcttgac 27347782  T
Q  131 aattttggacaatacgatttggtacagcctgaaaatgaatttcttgagtcttgcagaggcttggtaggttgacaaatgctacaatatttagatttggcat 230  Q
    |||||||||||||||||||| |||||||||||||||||||| |||| |||| | |||||||||| ||||||||||||||| |||  || || ||||| ||    
T  27347781 aattttggacaatacgattttgtacagcctgaaaatgaattccttgggtctggtagaggcttggaaggttgacaaatgctgcaaatttcagttttggaat 27347682  T
Q  231 attgacattctgatcaccttcttcacatacaaatatttcctc 272  Q
    |||||| |||| |||||   ||| ||||||||||||||||||    
T  27347681 attgactttctcatcac---ctttacatacaaatatttcctc 27347643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 117 - 277
Target Start/End: Original strand, 27392106 - 27392263
Alignment:
Q  117 agagagttcttgacaattttggacaatacgatttggtacagcctgaaaatgaatttcttgagtcttgcagaggcttggtaggttgacaaatgctacaata 216  Q
    |||||||||| ||||| |||| | || ||||| |||| | || |||||||||||| |||| |||| || |||||||||||||||||||||||||||||      
T  27392106 agagagttctcgacaactttgtataaaacgatatggtgctgcttgaaaatgaattccttgggtctggctgaggcttggtaggttgacaaatgctacaaat 27392205  T
Q  217 tttagatttggcatattgacattctgatcaccttcttcacatacaaatatttcctctagct 277  Q
    || |||||||| |||||||| |||| ||||    |||| ||||||||||||||||||||||    
T  27392206 ttcagatttggaatattgactttctcatca---acttcgcatacaaatatttcctctagct 27392263  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 144 - 278
Target Start/End: Original strand, 18026367 - 18026498
Alignment:
Q  144 acgatttggtacagcctgaaaatgaatttcttgagtcttgcagaggcttggtaggttgacaaatgctacaatat-ttagatttggcatattgacattctg 242  Q
    ||||||| |||| |||||||||||||||  ||| |||| || ||||||||||||||||| ||||||||| |||| | |||||||| |||||||| | |||    
T  18026367 acgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctac-atatctcagatttggaatattgacttcctg 18026465  T
Q  243 atcaccttcttcacatacaaatatttcctctagctt 278  Q
    ||||    ||||||||||||||||||||||||||||    
T  18026466 atca---acttcacatacaaatatttcctctagctt 18026498  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 26627878 - 26627750
Alignment:
Q  117 agagagttcttgacaattttggacaatacgatttggtacagcctgaaaatgaatttcttgagtcttgcagaggcttggtaggttgacaaatgctacaata 216  Q
    |||||||| ||||||||| || |||| |||||||  |||| ||||||| |||||| |||| |||| |||||||||| |||||| |||||||||||| | |    
T  26627878 agagagtttttgacaattctgtacaaaacgattttctacatcctgaaattgaattccttgtgtctggcagaggctt-gtaggtcgacaaatgctaccaca 26627780  T
Q  217 tttagatttggcatattgacattctgatca 246  Q
    ||||||||||| || | ||| |||||||||    
T  26627779 tttagatttggaatctcgactttctgatca 26627750  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 27460983 - 27461076
Alignment:
Q  184 cagaggcttggtaggttgacaaatgctacaatatttagatttggcatattgacattctgatcaccttcttcacatacaaatatttcctctagct 277  Q
    |||||||||||||| || |||||| ||||||  ||||||||||| || |  |  ||||||||| ||| ||||| ||||||||||||||||||||    
T  27460983 cagaggcttggtagatttacaaatactacaagttttagatttggaatctccagtttctgatcatctttttcacttacaaatatttcctctagct 27461076  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 17746079 - 17746200
Alignment:
Q  153 tacagcctgaaaatgaatttcttgagtcttg-cagaggcttggtaggttgacaaatgctacaatatttagatttggcatattgacattctgatcaccttc 251  Q
    |||||| ||||| |||||| |||||| |||| || ||||||||||||||||||||||| ||||  || || || || |||||||| |||| |||||   |    
T  17746079 tacagcttgaaattgaattccttgag-cttgacaaaggcttggtaggttgacaaatgccacaactttcagtttcggaatattgactttctcatcac---c 17746174  T
Q  252 ttcacatacaaatatttcctctagct 277  Q
    ||||| | ||||||||||||||||||    
T  17746175 ttcacttccaaatatttcctctagct 17746200  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 277
Target Start/End: Original strand, 19047399 - 19047520
Alignment:
Q  153 tacagcctgaaaatgaatttcttgagtcttg-cagaggcttggtaggttgacaaatgctacaatatttagatttggcatattgacattctgatcaccttc 251  Q
    |||||| ||||| |||||| |||||| |||| || ||||||||||||||||||||||| ||||  || || || || |||||||| |||| |||||   |    
T  19047399 tacagcttgaaattgaattccttgag-cttgacaaaggcttggtaggttgacaaatgccacaactttcagtttcggaatattgactttctcatcac---c 19047494  T
Q  252 ttcacatacaaatatttcctctagct 277  Q
    ||||| | ||||||||||||||||||    
T  19047495 ttcacttccaaatatttcctctagct 19047520  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 26114898 - 26114926
Alignment:
Q  183 gcagaggcttggtaggttgacaaatgcta 211  Q
    |||||||||||||||||||||||||||||    
T  26114898 gcagaggcttggtaggttgacaaatgcta 26114926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 26142185 - 26142241
Alignment:
Q  158 cctgaaaatgaatttcttgagtcttgcagaggcttggtaggttgacaaatgctacaa 214  Q
    |||||||||||||| | || |  | |||||| |||||||||||||||||||||||||    
T  26142185 cctgaaaatgaattccctgggcatggcagagccttggtaggttgacaaatgctacaa 26142241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 54511 - 54754
Alignment:
Q  34 atgtaaaaatattgggcaaagtctgtacctgagatataatcttctatgttatttg---agtcttctgttattgcgttagtcagatcagagagttcttgac 130  Q
    ||||||||||||||| |||||||||||||||| ||||||||   | ||| ||||    ||| ||||||||||||||||||||||   |||||||||||||    
T  54511 atgtaaaaatattggacaaagtctgtacctgacatataatcaattgtgtcatttataaagtgttctgttattgcgttagtcaga---gagagttcttgac 54607  T
Q  131 aattttggacaatacgatttggtacagcctgaaaatgaatttcttgagtcttgcagaggcttggtaggttgacaaatgctacaatatttagatttggcat 230  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||| |||| | |||||||||| ||||||  |||||||||||  || |||||||| |     
T  54608 aattttggacaaaacgattttgtacagcctgaaaatgaattccttgggtctggtagaggcttggaaggttggtaaatgctacaactttcagatttggaag 54707  T
Q  231 attgacattctgatcaccttcttcacatacaaatatttcctctagct 277  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  54708 attgactttctgatcaccttcttcacatacaaatatttcctctagct 54754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 117 - 280
Target Start/End: Complemental strand, 22391513 - 22391350
Alignment:
Q  117 agagagttcttgacaattttggacaatacgatttggtacagcctgaaaatgaatttcttgagtcttgcagaggcttggtaggttgacaaatgctacaata 216  Q
    |||||||| || ||||||||| |||| || |||| ||||||||||||||||||||||||| ||||   |||||||||||||||||||||||| |||||      
T  22391513 agagagttttttacaattttgtacaaaacaattttgtacagcctgaaaatgaatttcttgggtctgatagaggcttggtaggttgacaaatgatacaact 22391414  T
Q  217 tttagatttggcatattgacattctgatcaccttcttcacatacaaatatttcctctagcttat 280  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22391413 tttagatttggcatattgactttctgatcaccttcttcacatacaaatatttcctctagcttat 22391350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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