View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_high_2 (Length: 601)
Name: NF0641_high_2
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 88 - 601
Target Start/End: Original strand, 53095899 - 53096412
Alignment:
| Q |
88 |
tgtatagaccgaaaataaggcacttgacattttgagaactgttctaacctcctacttccacctttggtaaaacagtcttcaacctttaacccgttacctc |
187 |
Q |
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| T |
53095899 |
tgtatagaccgaaaataaggcacttgagattttgagaactgttctaacctcctaattccacctttggtaaaacagtcttcaacctttaacccgttacctc |
53095998 |
T |
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| Q |
188 |
cagccgacaaggacaaggacaagaagttgaaattctacagaatatgaaatataatcatcagatcatgaggaagagggaacaaggggggacatcattacca |
287 |
Q |
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| T |
53095999 |
cagccgacaaggacaaggacaagaagttgaaattctacagaatatgaaatataatcatcagatcatgaggaagagggaacaaggggggacatcattacca |
53096098 |
T |
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| Q |
288 |
aaagcattcataagcttacttgctttagaggatcacattttgcaggcatcggaggatccttagagagagatatgtcaagataatggcactgctgctgaag |
387 |
Q |
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| T |
53096099 |
aaagcattcataagcttacttgctttagaggatcacattttgcaggcatcggaggatccttagagagagatatgtcaagataatggcactgctgctgaag |
53096198 |
T |
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| Q |
388 |
aataccatttttagtttcaggaaaaatgtccaaactagcagaatgaactgttccaacatcaaaactatttccatttctagtcccatttgagttttgtgct |
487 |
Q |
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| T |
53096199 |
aataccatttttagtttcaggaaaaatgtccaaactagcagaatgaactgttccaacatcaaaactatttccatttctcgtcccatttgagttttgtgct |
53096298 |
T |
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| Q |
488 |
ttgattagaactccacactttgatccttggtgtactctgggttggtgacattcataacgctcgggttctttggcaccatgnnnnnnnggaacttctaaac |
587 |
Q |
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| T |
53096299 |
ttgattagaactccacactttgatccttggtgtactctgggttggtgacattcataacgctcgggttctttggcaccatgtttttttggaacttctaaac |
53096398 |
T |
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| Q |
588 |
tccggatgagctga |
601 |
Q |
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| T |
53096399 |
tccggatgagctga |
53096412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 413 - 562
Target Start/End: Complemental strand, 1369483 - 1369335
Alignment:
| Q |
413 |
atgtccaaactagcagaatgaactgttccaacatcaaaactatttccatttctagtcccatttgagttttgtgctttgattagaactccacactttgatc |
512 |
Q |
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||||||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| | | ||| ||||||| |
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| T |
1369483 |
atgtccaaactagtagtatgaactgttccagcatcaaaactatttccatttctcatcccattagagttttgtgctttgattagga-tatacattttgatc |
1369385 |
T |
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| Q |
513 |
cttggtgtactctgggttggtgacattcataacgctcgggttctttggca |
562 |
Q |
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|||||| ||||||| ||||||||||||||||||||| | |||||||||| |
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| T |
1369384 |
tttggtgaactctggtttggtgacattcataacgctcagattctttggca |
1369335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 26143302 - 26143364
Alignment:
| Q |
208 |
aagaagttgaaattctacagaatatgaaatataatcatcagatcatgaggaagagggaacaag |
270 |
Q |
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| T |
26143302 |
aagaagttgaagctttgcagaatatgaaatataatcatcagagcatgaggaagaggtaacaag |
26143364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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