View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_high_20 (Length: 322)
Name: NF0641_high_20
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_high_20 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 96 - 322
Target Start/End: Original strand, 12637171 - 12637397
Alignment:
| Q |
96 |
aatttcacatgcttgtccacattctctaagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcattt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12637171 |
aatttcacatgcttgtccacattctctaagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcattt |
12637270 |
T |
|
| Q |
196 |
atatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattg |
295 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12637271 |
atatagttttcaccaacagttcctttcttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattg |
12637370 |
T |
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| Q |
296 |
cccaaactatggtagtggatgatgttt |
322 |
Q |
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||||||||||||||||||||||||||| |
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| T |
12637371 |
cccaaactatggtagtggatgatgttt |
12637397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 100 - 308
Target Start/End: Complemental strand, 15885788 - 15885577
Alignment:
| Q |
100 |
tcacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcattta |
196 |
Q |
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|||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||| |||||||||| ||| ||||| | |
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| T |
15885788 |
tcacatgcttgttcacattctcttggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaa |
15885689 |
T |
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| Q |
197 |
tatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgc |
296 |
Q |
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||||||| ||||||||| |||||| ||||||| |||| ||| ||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
15885688 |
tatagttctcaccaacaattccttttgtgttgaacatttctcttacttcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgc |
15885589 |
T |
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| Q |
297 |
ccaaactatggt |
308 |
Q |
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|||||||||||| |
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| T |
15885588 |
ccaaactatggt |
15885577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 310
Target Start/End: Original strand, 12610079 - 12610292
Alignment:
| Q |
100 |
tcacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcattta |
196 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||| ||| |||| ||||| ||||||||||| |
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| T |
12610079 |
tcacatgcttgtccacattctcttggaagtaaaagaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataagtgagttcattta |
12610178 |
T |
|
| Q |
197 |
tatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgc |
296 |
Q |
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|| | ||||| ||||| ||||||| |||||||||| | ||| || |||| |||||||||||||||||||||| ||||||||| ||||||| |||||| |
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| T |
12610179 |
tacaattttcttcaacatttcctttcatgttgaatatatctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacattgc |
12610278 |
T |
|
| Q |
297 |
ccaaactatggtag |
310 |
Q |
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||||||||| |||| |
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| T |
12610279 |
ccaaactatagtag |
12610292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 100 - 304
Target Start/End: Original strand, 62327 - 62534
Alignment:
| Q |
100 |
tcacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcattta |
196 |
Q |
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|||||||||| || ||||||||| ||||||||||| | ||| ||||||||||| || ||||||||||| | | |||||| |||| |||||||| | |
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| T |
62327 |
tcacatgcttctctacattctcttggaagtaaaagagcacctggggggtgtaacctcagggtctctttcacaattgacttcacgtatttgagttcatgca |
62426 |
T |
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| Q |
197 |
tatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgc |
296 |
Q |
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|| | ||||| ||| |||||| ||| ||||| |||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
62427 |
tacaactttcatcaaaagctcccttcatgttgtatatttctctcacttcatcttgtgctttcttcatcactcttggatctcttaccaactctgccattgc |
62526 |
T |
|
| Q |
297 |
ccaaacta |
304 |
Q |
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|||||||| |
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| T |
62527 |
ccaaacta |
62534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 308
Target Start/End: Original strand, 21780017 - 21780198
Alignment:
| Q |
127 |
aaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgt |
226 |
Q |
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|||||||| | ||||||||||| ||||| || ||||| || ||| | |||||||| | ||||||||| || | |||||| |||| ||||||| | | |
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| T |
21780017 |
aaaagaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattt |
21780116 |
T |
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| Q |
227 |
tgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggt |
308 |
Q |
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|||| | || ||||||||||| ||||||||||||||| | ||||||||||||||| | ||| ||||||||||| ||||||| |
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| T |
21780117 |
tgaaaacttctctcacttcatcttgtgctttcttcattattcttggatcccttaccatttctaccattgcccaatctatggt |
21780198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 308
Target Start/End: Original strand, 23146124 - 23146305
Alignment:
| Q |
127 |
aaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgt |
226 |
Q |
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|
|||||||| | ||||||||||| ||||| || ||||| || ||||| |||||||| | ||||||||| || | |||||| |||| ||||||| | | |
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| T |
23146124 |
aaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattt |
23146223 |
T |
|
| Q |
227 |
tgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggt |
308 |
Q |
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|||| | | |||||| |||| ||||||||||||||| | |||||||||| |||| || ||| ||||||||||| ||||||| |
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| T |
23146224 |
tgaaaacctctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaattctaccattgcccaatctatggt |
23146305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 127 - 280
Target Start/End: Original strand, 23039245 - 23039398
Alignment:
| Q |
127 |
aaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgt |
226 |
Q |
| |
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|||||||| ||||||||||||||||| || || ||||| || ||| |||||||||| | ||||||||| || | |||||| |||| ||||||| | | |
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| T |
23039245 |
aaaagaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattt |
23039344 |
T |
|
| Q |
227 |
tgaatatttttctcacttcatattgtgctttcttcatcactcttggatccctta |
280 |
Q |
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|
|||| | | |||||| |||| ||| ||||||||||| | |||||||||||||| |
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|
| T |
23039345 |
tgaaaacctctctcacctcatcttgcgctttcttcattattcttggatccctta |
23039398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 139 - 308
Target Start/End: Original strand, 23148974 - 23149143
Alignment:
| Q |
139 |
ggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgttgaatatttttc |
238 |
Q |
| |
|
|||||||||| ||||| || ||||| || ||||| |||||||| | ||||||||| || | |||||| |||| ||||||| | ||||| | | || |
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| T |
23148974 |
ggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacctttcctttcattttgaaaacctctc |
23149073 |
T |
|
| Q |
239 |
tcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggt |
308 |
Q |
| |
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|||| |||| ||||||||||||||| | |||||||||| |||| | |||| ||||||||||| ||||||| |
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|
| T |
23149074 |
tcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgcccaatctatggt |
23149143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 23036496 - 23036555
Alignment:
| Q |
249 |
ttgtgctttcttcatcactcttggatcccttactaactctgccattgcccaaactatggt |
308 |
Q |
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||||||||||||||| | |||||||| |||||| | ||||||||||||||| ||||||| |
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|
| T |
23036496 |
ttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggt |
23036555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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