View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_high_21 (Length: 319)
Name: NF0641_high_21
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 4695788 - 4696069
Alignment:
| Q |
11 |
cagagaccagacagctataaacagaaacttctaagcttaatccaaacataataatataattattaagtcaaattattaaagtttatgtgtgagaatagtt |
110 |
Q |
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| T |
4695788 |
cagagaccagacagctataaacagaaacttctaagcttaatccaaacataataatataattattaagtcaaattattaaagtttatgtgtgagaatagtt |
4695887 |
T |
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| Q |
111 |
ttgctctgtaaagtagaagggaatatccaaaaggcggaacaaacgggagagaacaatcctaccacaaaagaacatagacttcaaaactagaaatacaagt |
210 |
Q |
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| T |
4695888 |
ttgctctgtaaagtagaagggaatatccaaaaggcagaacaaacgggagagaacaatcctaccacaaaagaacatagacttcaaaactagaaatacaagt |
4695987 |
T |
|
| Q |
211 |
gagttagcaattagtgtataattatataatcaagcactgaaagaacaaaattattaaattggagtgacttttcatgtttatg |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4695988 |
gagttagcaattagtgtataattatataatcaagcactgaaacaacaaaattattaaattggagtgacttttcatgtttatg |
4696069 |
T |
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