View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_high_24 (Length: 303)
Name: NF0641_high_24
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 2141062 - 2141241
Alignment:
| Q |
41 |
tatggttttgctgtctatctttacataggtatagagttacccacatgaagagcaaaattccagttagtccccatactacttgnnnnnnntagatagtttt |
140 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| |
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| T |
2141062 |
tatgattttgctgtctatctttacatagggatagagttacccacatgaagagcaaaattccagttagtccccatatta---gaaaaaaacagatagtttt |
2141158 |
T |
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| Q |
141 |
attctttggagttgtaggatttccacctgtataattagaactgtagtataagctattgcaatttatttatacattatcaataa |
223 |
Q |
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| T |
2141159 |
attctttggagttgtaggatttccacctgtataattagaactgtagtataagctattgcaatttatttatacattatcaataa |
2141241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 2145595 - 2145765
Alignment:
| Q |
40 |
atatggttttgctgtctatctttacataggtatagagttacccacatgaagagcaaaattccagttagtccccatactacttgnnnnnnntagatagttt |
139 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||| ||| |
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| T |
2145595 |
atatggttttgctgtctatctttacatagggatagagttacccccatgaggagcaaaattccagttactccccatactacttcaaaaaagtagatatttt |
2145694 |
T |
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| Q |
140 |
tattctttggagttgtaggatttccacctgtataattagaactgtagtataagctattgcaatttatttata |
211 |
Q |
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| T |
2145695 |
catgctttggacttggaggatttacgcctatagaattagaact-tagtataagtttttgcaatttatttata |
2145765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 2141649 - 2141701
Alignment:
| Q |
215 |
tatcaataaaactatatatttgtattataaaaagttatacctgggttatcaaa |
267 |
Q |
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| T |
2141649 |
tatcaataaaactatatatttgtattataaaaagttatacctgggttatcaaa |
2141701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 2150071 - 2150146
Alignment:
| Q |
41 |
tatggttttgctgtctatctttacataggtatagagttacccacatgaagagcaaaattccagttagtccccatac |
116 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| ||||| || ||||||||| |
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| T |
2150071 |
tatggttttgctgtctatctttacatacagataaagttacccacatgaagaacaaaagtccagatattccccatac |
2150146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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