View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_high_26 (Length: 299)
Name: NF0641_high_26
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 51 - 245
Target Start/End: Complemental strand, 43468858 - 43468663
Alignment:
| Q |
51 |
tggcctattgcgcacgctagcctaagcaagaagtaatactatcaacagaaaagaactttcttggtcccaaagccaacagaagaaaaatataacaaactaa |
150 |
Q |
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| T |
43468858 |
tggcctattgcgcacgctagcctaagcaagaagtaatactatcaacagaaaagaactttcttggtcccaaagccaacagaagaaaaatataagaaactaa |
43468759 |
T |
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| Q |
151 |
attgcttcactctatag-gnnnnnnnnnntataaaaagtacgaaaagaatttcttgttggaaaagccaaatagagcattatataccactctctgct |
245 |
Q |
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| T |
43468758 |
attgcttcactctatagaaaaaaaaaatatataaaaagtacgaaaagaatttcttgttggaaaagccaaacagagcattatataccactctctgct |
43468663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 43480121 - 43480082
Alignment:
| Q |
180 |
ataaaaagtacgaaaagaatttcttgttggaaaagccaaa |
219 |
Q |
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| T |
43480121 |
ataaaaagtaagaaaataatttcttgttggaaaagccaaa |
43480082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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