View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_high_30 (Length: 284)
Name: NF0641_high_30
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 6048716 - 6048978
Alignment:
| Q |
1 |
tattaaaaaagtaattggtataaaagcattaaaaagaataggaaatataaggttgacacttaataccaaagctaaatgatgatttactaattaaannnnn |
100 |
Q |
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| T |
6048716 |
tattaaaaaagtaattgatataaaagtattaaaaagaataggaaatataaggttgacacttaataccaaagctaaatgatgatttactaattaa--tttt |
6048813 |
T |
|
| Q |
101 |
nnnnnaactttagtgatgatgtgaactttcttatatgggccatgtatttgcaaattaaagttggtaaataactcgtgcttagttgttttgggtgttaacc |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6048814 |
tttttaactttagtgatgatgtgaactttcttttatgggccatgtatttgcaaattaaagttggtaaataactcgtgcttagttgttttgggtgttaacc |
6048913 |
T |
|
| Q |
201 |
cctcgttccttgagagaaagagaattgttttgcctaggaatcaaactcaggtttttctgaatgat |
265 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
6048914 |
cctcgttcctcgagagaaagagaattgttttgcctaacaatcaaattcaggtttttctgaatgat |
6048978 |
T |
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