View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0641_high_39 (Length: 238)

Name: NF0641_high_39
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0641_high_39
NF0641_high_39
[»] chr5 (1 HSPs)
chr5 (1-209)||(25471371-25471579)
[»] chr7 (1 HSPs)
chr7 (2-98)||(9270733-9270829)
[»] scaffold0477 (1 HSPs)
scaffold0477 (2-102)||(69-169)
[»] chr6 (1 HSPs)
chr6 (2-102)||(4649052-4649152)
[»] chr4 (2 HSPs)
chr4 (1-101)||(47507679-47507779)
chr4 (16-48)||(30176437-30176469)
[»] scaffold0121 (1 HSPs)
scaffold0121 (2-100)||(25449-25547)
[»] chr8 (2 HSPs)
chr8 (3-99)||(24194599-24194695)
chr8 (2-46)||(5337811-5337855)
[»] scaffold0057 (2 HSPs)
scaffold0057 (152-203)||(7409-7460)
scaffold0057 (10-94)||(7538-7622)
[»] chr3 (1 HSPs)
chr3 (2-46)||(43731564-43731608)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 25471579 - 25471371
Alignment:
Q  1 tgatagttgtttcatttgcaatgactattaacaaaagccaaagacaatagttaacgaatgttggcatatatttgccaaatgttgtgttttcacatggtca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25471579 tgatagttgtttcatttgcaatgactattaacaaaagccaaagacaatagttaacgaatgttggcatatatttgccaaatgttgtgttttcacatggtca 25471480  T
Q  101 gtctatagaagaattgaagatgcttataacttataatagatgagaatagtcaagataccgatgtgacttttagtgtcatatatagagaagtatttcgtaa 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  25471479 gtccatagaagaattgaagatgcttataacttataatagatgagaatagtcaagataccgatgtgacttttaatgtcgtatatagagaagtatttcgtaa 25471380  T
Q  201 tgtaggata 209  Q
    |||||||||    
T  25471379 tgtaggata 25471371  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 9270733 - 9270829
Alignment:
Q  2 gatagttgtttcatttgcaatgactattaacaaaagccaaagacaatagttaacgaatgttggcatatatttgccaaatgttgtgttttcacatggt 98  Q
    ||||||||||||||| ||||| ||||||||||||||  |   |||||  |||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  9270733 gatagttgtttcattcgcaataactattaacaaaagttagtaacaatctttaaagaatgttgggatatatttgtcaaatgttgtgttttcacatggt 9270829  T

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Target: scaffold0477 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 169 - 69
Alignment:
Q  2 gatagttgtttcatttgcaatgactattaacaaaagccaaagacaatagttaacgaatgttggcatatatttgccaaatgttgtgttttcacatggtcag 101  Q
    ||||||||||||  | |||||||||| ||||||||| ||| |||| |   | | ||| ||||| ||||||||||||||| ||||||||||||||||||||    
T  169 gatagttgtttctctcgcaatgactactaacaaaagtcaaggacagtctctgaagaaagttgggatatatttgccaaattttgtgttttcacatggtcag 70  T
Q  102 t 102  Q
    |    
T  69 t 69  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 4649152 - 4649052
Alignment:
Q  2 gatagttgtttcatttgcaatgactattaacaaaagccaaagacaatagttaacgaatgttggcatatatttgccaaatgttgtgttttcacatggtcag 101  Q
    ||||||||||||  | |||||||||| ||||||||| ||| |||| |   | | ||| ||||| ||||||||||||||| ||||||||||||||||||||    
T  4649152 gatagttgtttctctcgcaatgactactaacaaaagtcaaggacagtctctgaagaaagttgggatatatttgccaaattttgtgttttcacatggtcag 4649053  T
Q  102 t 102  Q
    |    
T  4649052 t 4649052  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 47507679 - 47507779
Alignment:
Q  1 tgatagttgtttcatttgcaatgactattaacaaaagccaaagacaatagttaacgaatgttggcatatatttgccaaatgttgtgttttcacatggtca 100  Q
    |||||||||||||||| ||||||||||||||||| || ||| ||||||  |||| ||||||||  |||||| |||||| |  | |||||||||| |||||    
T  47507679 tgatagttgtttcattcgcaatgactattaacaagagtcaaggacaatctttaaagaatgttgatatatatctgccaagtcctatgttttcacacggtca 47507778  T
Q  101 g 101  Q
    |    
T  47507779 g 47507779  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 30176469 - 30176437
Alignment:
Q  16 ttgcaatgactattaacaaaagccaaagacaat 48  Q
    |||||||||||||||||||||| ||||||||||    
T  30176469 ttgcaatgactattaacaaaagtcaaagacaat 30176437  T

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Target: scaffold0121 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 25449 - 25547
Alignment:
Q  2 gatagttgtttcatttgcaatgactattaacaaaagccaaagacaatagttaacgaatgttggcatatatttgccaaatgttgtgttttcacatggtca 100  Q
    |||||||||||| || |||||||||||||||||||| ||| |||| |  || | ||| ||||  |||||||| |||| |  ||||||||||||||||||    
T  25449 gatagttgtttctttcgcaatgactattaacaaaagtcaaggacagtctttgaagaaagttgagatatattttccaagtcatgtgttttcacatggtca 25547  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 24194599 - 24194695
Alignment:
Q  3 atagttgtttcatttgcaatgactattaacaaaagccaaagacaatagttaacgaatgttggcatatatttgccaaatgttgtgttttcacatggtc 99  Q
    ||||||||||| || |||||||||||||||||||| ||| ||||||   |||  |  ||||| |||||||| |||| |  |||||||||||||||||    
T  24194599 atagttgtttctttcgcaatgactattaacaaaagtcaatgacaatctctaaaaatagttgggatatatttaccaagtcctgtgttttcacatggtc 24194695  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 5337811 - 5337855
Alignment:
Q  2 gatagttgtttcatttgcaatgactattaacaaaagccaaagaca 46  Q
    |||||||||||| || |||||||||||||||||||| ||| ||||    
T  5337811 gatagttgtttctttcgcaatgactattaacaaaagtcaaggaca 5337855  T

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Target: scaffold0057 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 7460 - 7409
Alignment:
Q  152 aagataccgatgtgacttttagtgtcatatatagagaagtatttcgtaatgt 203  Q
    |||||||||| ||||||| || | || |||||||||||||||||||||||||    
T  7460 aagataccgacgtgacttctaatctcgtatatagagaagtatttcgtaatgt 7409  T

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Target: scaffold0057; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 7622 - 7538
Alignment:
Q  10 tttcatttgcaatgactattaacaaaagccaaagacaatagttaacgaatgttggcatatatttgccaaatgttgtgttttcaca 94  Q
    |||||||  |||||||||||||||||||  |||||||||  |||| |||  |||| |||||| |||||| |  ||||||||||||    
T  7622 tttcattcacaatgactattaacaaaagttaaagacaatctttaaagaactttgggatatatctgccaagtcctgtgttttcaca 7538  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 43731608 - 43731564
Alignment:
Q  2 gatagttgtttcatttgcaatgactattaacaaaagccaaagaca 46  Q
    ||||| |||||| ||||||||||||||||||||||| ||| ||||    
T  43731608 gatagctgtttcttttgcaatgactattaacaaaagtcaaggaca 43731564  T

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