View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0641_high_7 (Length: 443)

Name: NF0641_high_7
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0641_high_7
NF0641_high_7
[»] chr5 (10 HSPs)
chr5 (330-408)||(42262025-42262103)
chr5 (181-229)||(15221663-15221711)
chr5 (99-175)||(35922606-35922682)
chr5 (95-175)||(43461835-43461915)
chr5 (175-210)||(35922669-35922704)
chr5 (178-229)||(36169427-36169478)
chr5 (183-229)||(7156180-7156226)
chr5 (175-229)||(43262794-43262848)
chr5 (175-229)||(43461795-43461848)
chr5 (174-211)||(38522079-38522116)
[»] scaffold0043 (1 HSPs)
scaffold0043 (174-229)||(86935-86990)
[»] chr2 (6 HSPs)
chr2 (100-175)||(45305866-45305941)
chr2 (181-229)||(43900495-43900543)
chr2 (180-229)||(28527284-28527333)
chr2 (175-210)||(41212424-41212459)
chr2 (175-229)||(1400730-1400784)
chr2 (351-403)||(44141763-44141815)
[»] chr4 (11 HSPs)
chr4 (175-229)||(24669272-24669326)
chr4 (331-408)||(42449465-42449542)
chr4 (175-222)||(17633442-17633489)
chr4 (175-229)||(35544513-35544567)
chr4 (181-229)||(9809041-9809089)
chr4 (175-210)||(1966790-1966825)
chr4 (100-175)||(9810659-9810734)
chr4 (175-210)||(9810881-9810916)
chr4 (175-210)||(17633298-17633333)
chr4 (100-175)||(17633476-17633551)
chr4 (181-209)||(55666938-55666966)
[»] chr3 (20 HSPs)
chr3 (174-229)||(27365118-27365174)
chr3 (95-175)||(27040722-27040802)
chr3 (174-221)||(27326173-27326220)
chr3 (174-221)||(27332410-27332457)
chr3 (175-229)||(3823612-3823666)
chr3 (175-219)||(5341985-5342029)
chr3 (175-227)||(19280298-19280350)
chr3 (174-222)||(27707634-27707682)
chr3 (182-229)||(31545715-31545762)
chr3 (180-229)||(27335512-27335562)
chr3 (180-209)||(11501274-11501303)
chr3 (106-175)||(11501410-11501479)
chr3 (177-210)||(22432448-22432481)
chr3 (175-216)||(27079402-27079443)
chr3 (175-216)||(27085199-27085240)
chr3 (180-229)||(27364961-27365010)
chr3 (174-229)||(18733438-18733494)
chr3 (175-211)||(19280159-19280195)
chr3 (185-229)||(27335360-27335404)
chr3 (180-208)||(34164325-34164353)
[»] scaffold0251 (1 HSPs)
scaffold0251 (100-175)||(10750-10825)
[»] chr6 (12 HSPs)
chr6 (100-175)||(13767102-13767177)
chr6 (181-229)||(23595121-23595169)
chr6 (175-229)||(2430651-2430705)
chr6 (175-209)||(3222551-3222585)
chr6 (175-229)||(9068504-9068558)
chr6 (180-229)||(15341859-15341908)
chr6 (181-221)||(10304802-10304842)
chr6 (181-229)||(33815110-33815158)
chr6 (174-209)||(11108125-11108160)
chr6 (180-229)||(3222397-3222446)
chr6 (174-222)||(11108177-11108225)
chr6 (174-210)||(23595259-23595295)
[»] chr1 (12 HSPs)
chr1 (180-228)||(38244801-38244849)
chr1 (174-220)||(2995962-2996007)
chr1 (180-222)||(5855072-5855114)
chr1 (181-229)||(9929871-9929919)
chr1 (180-232)||(17227499-17227551)
chr1 (181-227)||(34490289-34490335)
chr1 (175-221)||(42604325-42604371)
chr1 (174-227)||(5831633-5831686)
chr1 (181-210)||(24708074-24708103)
chr1 (127-175)||(5831672-5831720)
chr1 (175-227)||(25238577-25238629)
chr1 (181-229)||(34490156-34490203)
[»] chr7 (16 HSPs)
chr7 (175-210)||(22740117-22740152)
chr7 (175-229)||(15958269-15958323)
chr7 (175-229)||(20556727-20556781)
chr7 (175-210)||(5083749-5083784)
chr7 (178-229)||(5083885-5083936)
chr7 (100-175)||(18312726-18312801)
chr7 (174-229)||(18312787-18312842)
chr7 (175-234)||(22033154-22033213)
chr7 (174-229)||(27523441-27523496)
chr7 (180-210)||(21589741-21589771)
chr7 (175-221)||(28805125-28805171)
chr7 (362-400)||(45866561-45866599)
chr7 (106-175)||(28804887-28804956)
chr7 (181-209)||(15958428-15958456)
chr7 (181-229)||(20556868-20556916)
chr7 (177-221)||(21589586-21589630)
[»] scaffold0126 (1 HSPs)
scaffold0126 (182-228)||(21575-21621)
[»] chr8 (11 HSPs)
chr8 (175-229)||(31596756-31596810)
chr8 (180-229)||(40502388-40502437)
chr8 (127-175)||(5322097-5322145)
chr8 (181-229)||(15714789-15714837)
chr8 (100-175)||(31596694-31596769)
chr8 (175-229)||(6809895-6809949)
chr8 (180-210)||(40502195-40502225)
chr8 (174-211)||(5322074-5322111)
chr8 (174-211)||(33286177-33286214)
chr8 (174-222)||(31273663-31273711)
chr8 (95-175)||(31273697-31273777)
[»] scaffold0213 (1 HSPs)
scaffold0213 (180-229)||(24932-24981)
[»] scaffold1126 (1 HSPs)
scaffold1126 (175-229)||(303-357)


Alignment Details
Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 42262025 - 42262103
Alignment:
Q  330 agatttgatattggaagatagatcttatgaccccttgtgggagatatattctctcaaaagtaactcttggaagagactt 408  Q
    ||||||||||| |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42262025 agatttgatatgggaagatagatcatacgatcccttgtgggagatatattctctcaaaagtaactcttggaagaaactt 42262103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 15221711 - 15221663
Alignment:
Q  181 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    ||||||||||||||||||||||||||||||   ||||||||| ||||||    
T  15221711 aaatatatggtctgtgtgaccacatttttttaattgtgtgaccactatt 15221663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 35922606 - 35922682
Alignment:
Q  99 taataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    |||||||||| ||| ||||| |||| | ||||||  |||||||||||||||  |||||| || ||||||||||||||    
T  35922606 taataaagatcggtagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaatcaaatatat 35922682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 43461915 - 43461835
Alignment:
Q  95 aatataataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    |||| ||||||||||||| |||||||||| | |||  || |||||||| |||| | ||||||| || ||||||||||||||    
T  43461915 aatagaataaagataggtagacactcttaatgtgtgtacccctttgtagcacttttgaaaatttcagttaatcaaatatat 43461835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 35922669 - 35922704
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacatttttt 210  Q
    ||||||||||||||||| ||||||||||||||||||    
T  35922669 ttaatcaaatatatggtatgtgtgaccacatttttt 35922704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 36169478 - 36169427
Alignment:
Q  178 atcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||||| |||||||||||||| |||| |||| ||||| ||||||    
T  36169478 atcaaatatatggtatgtgtgaccacattctttcagttgcgtgaccactatt 36169427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 7156226 - 7156180
Alignment:
Q  183 atatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||| |||||||||||||||||  |||||||||| ||||||    
T  7156226 atatatggtccgtgtgaccacatttttttagttgtgtgaccactatt 7156180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 43262848 - 43262794
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||| |||||||||||||||||||||||||||| ||  ||| |||||| ||||||    
T  43262848 ttaaccaaatatatggtctgtgtgaccacatttgtttagttatgtgactactatt 43262794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 43461848 - 43461795
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    ||||||||||||||||||| || ||||| |||||||| |||||||||| ||||||    
T  43461848 ttaatcaaatatatggtctttg-gaccatattttttcagttgtgtgaccactatt 43461795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 38522116 - 38522079
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttttc 211  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  38522116 attaaccaaatatatggtctatgtgaccacattttttc 38522079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 86935 - 86990
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||| ||||||    
T  86935 attaatcaaatatatagtttgtgtgaccacattttttcggttgtgtgaccactatt 86990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 45305866 - 45305941
Alignment:
Q  100 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    ||||||||||| || |||| |||| |||||||||||||||||| ||||||| |||||| || ||||||||||||||    
T  45305866 aataaagatagatttacacccttaatatgtacactcctttgtaccactctaaaaaatttcagttaatcaaatatat 45305941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 43900495 - 43900543
Alignment:
Q  181 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    ||||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  43900495 aaatatatggtctgtgtgatcacattttttcagttgtgtgaccactatt 43900543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 28527284 - 28527333
Alignment:
Q  180 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||||||||||||||||||||||  |||| ||||| ||||||    
T  28527284 caaatatatggtctgtgtgaccacatttttttagttgcgtgaccactatt 28527333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 41212459 - 41212424
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacatttttt 210  Q
    |||| |||||||||||||||||||||||||||||||    
T  41212459 ttaaccaaatatatggtctgtgtgaccacatttttt 41212424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 1400730 - 1400784
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||| |||||||||||| ||||||||||||||||||  |||| ||||| ||||||    
T  1400730 ttaaccaaatatatggtatgtgtgaccacattttttaagttgcgtgaccactatt 1400784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 44141815 - 44141763
Alignment:
Q  351 atcttatgaccccttgtgggagatatattctctcaaaagtaactcttggaaga 403  Q
    |||||||||||| ||||  |||||||||  ||| |||||||||||||||||||    
T  44141815 atcttatgacccattgtttgagatatatagtctaaaaagtaactcttggaaga 44141763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 24669326 - 24669272
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  24669326 ttaatcaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactatt 24669272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 42449465 - 42449542
Alignment:
Q  331 gatttgatattggaagatagatcttatgaccccttgtgggagatatattctctcaaaagtaactcttggaagagactt 408  Q
    |||||||||| |||||||| ||| || ||||||||||||||  |||||  |||||||| |||||||||||||| ||||    
T  42449465 gatttgatatgggaagataaatcctacgaccccttgtgggaagtatatagtctcaaaaataactcttggaagaaactt 42449542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 17633489 - 17633442
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgac 222  Q
    |||| |||||||||||||||||||||||||||||||| |||| |||||    
T  17633489 ttaaccaaatatatggtctgtgtgaccacattttttcagttgcgtgac 17633442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 35544567 - 35544513
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||| |||| ||||||    
T  35544567 ttaatcaaatatatggtatgtgtgatcacattttttccgttgtatgaccactatt 35544513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 9809041 - 9809089
Alignment:
Q  181 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||||| |||||||||||||||| |||| ||||| ||||||    
T  9809041 aaatatatggtctgcgtgaccacattttttcagttgcgtgaccactatt 9809089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 1966790 - 1966825
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacatttttt 210  Q
    |||| |||||||||||||||||||||||||||||||    
T  1966790 ttaaccaaatatatggtctgtgtgaccacatttttt 1966825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 9810659 - 9810734
Alignment:
Q  100 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    ||||||||||||||||||| |||| ||||||||| | |||||| |||| |  |||||| || ||||| ||||||||    
T  9810659 aataaagataggttgacacccttaatatgtacacccttttgtaccactatgaaaaatttcagttaattaaatatat 9810734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 9810916 - 9810881
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacatttttt 210  Q
    |||| |||||||||||||||||||||||||||||||    
T  9810916 ttaaccaaatatatggtctgtgtgaccacatttttt 9810881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 17633298 - 17633333
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacatttttt 210  Q
    |||| |||||||||||||||||||||||||||||||    
T  17633298 ttaaccaaatatatggtctgtgtgaccacatttttt 17633333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 17633551 - 17633476
Alignment:
Q  100 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    |||||||||||||||| || |||| ||||||||| |||||||| |||| |  |||||| || |||| |||||||||    
T  17633551 aataaagataggttgatacccttaatatgtacacccctttgtaccactttgaaaaatttcagttaaccaaatatat 17633476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 55666966 - 55666938
Alignment:
Q  181 aaatatatggtctgtgtgaccacattttt 209  Q
    |||||||||||||||||||||||||||||    
T  55666966 aaatatatggtctgtgtgaccacattttt 55666938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 27365174 - 27365118
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacatt-ttttcggttgtgtgacaactatt 229  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  27365174 attaatcaaatatatggtttgtgtgaccacatttttttcggttgtgtgaccactatt 27365118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 27040802 - 27040722
Alignment:
Q  95 aatataataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    |||| |||||||||||||||||||||| | | |||||| |||||||||  ||||||||||||| |  |||| |||||||||    
T  27040802 aatagaataaagataggttgacactctcaatgtgtacattcctttgtactactctagaaaatttcggttaaccaaatatat 27040722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 27326220 - 27326173
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtga 221  Q
    |||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  27326220 attaatcaaatatatggtttgtctgaccacattttttcggttgcgtga 27326173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 27332457 - 27332410
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtga 221  Q
    |||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  27332457 attaatcaaatatatggtttgtctgaccacattttttcggttgcgtga 27332410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 3823612 - 3823666
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||| ||| |||||||||||||||||||||||||||| |||| ||||| ||||||    
T  3823612 ttaaccaattatatggtctgtgtgaccacattttttctgttgcgtgaccactatt 3823666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 5342029 - 5341985
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgt 219  Q
    |||||| |||||||||||||||||||||||||||||  |||||||    
T  5342029 ttaatcgaatatatggtctgtgtgaccacatttttttagttgtgt 5341985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 19280350 - 19280298
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaacta 227  Q
    |||||||||||||||||||||||||| |||||||||  || ||||||| ||||    
T  19280350 ttaatcaaatatatggtctgtgtgacaacattttttaagtggtgtgaccacta 19280298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 27707634 - 27707682
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgac 222  Q
    |||||||||||||||||| |||||| ||||||||||||  |||||||||    
T  27707634 attaatcaaatatatggtttgtgtgcccacattttttcaattgtgtgac 27707682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 31545762 - 31545715
Alignment:
Q  182 aatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||| ||||||||||||||||  |||||||||| ||||||    
T  31545762 aatatatggtctatgtgaccacatttttttagttgtgtgaccactatt 31545715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 27335562 - 27335512
Alignment:
Q  180 caaatatatggtctgtgtgaccacatt-ttttcggttgtgtgacaactatt 229  Q
    |||||||||||| |||||||||||||| |||||||||| ||||| ||||||    
T  27335562 caaatatatggtttgtgtgaccacatttttttcggttgcgtgactactatt 27335512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 209
Target Start/End: Original strand, 11501274 - 11501303
Alignment:
Q  180 caaatatatggtctgtgtgaccacattttt 209  Q
    ||||||||||||||||||||||||||||||    
T  11501274 caaatatatggtctgtgtgaccacattttt 11501303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 11501479 - 11501410
Alignment:
Q  106 gataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    ||||||||||||| |||| | ||||||||||||| || |||| |||||||||  | |||| |||||||||    
T  11501479 gataggttgacacacttaatgtgtacactcctttataccactttagaaaatttaagttaaccaaatatat 11501410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 22432481 - 22432448
Alignment:
Q  177 aatcaaatatatggtctgtgtgaccacatttttt 210  Q
    |||||||||||||||||||||||| |||||||||    
T  22432481 aatcaaatatatggtctgtgtgactacatttttt 22432448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 27079443 - 27079402
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttg 216  Q
    |||| ||||||||||||||||||||||||| |||||| ||||    
T  27079443 ttaaccaaatatatggtctgtgtgaccacaatttttcagttg 27079402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 27085240 - 27085199
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttg 216  Q
    |||| ||||||||||||||||||||||||| |||||| ||||    
T  27085240 ttaaccaaatatatggtctgtgtgaccacaatttttcagttg 27085199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 27364961 - 27365010
Alignment:
Q  180 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||| || ||||||||||| |||  |||||||||||||||||    
T  27364961 caaatatatggtatgcgtgaccacattattttagttgtgtgacaactatt 27365010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 18733438 - 18733494
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacatttt-ttcggttgtgtgacaactatt 229  Q
    ||||| |||||||||||| ||||| |||||||||| |||||||| ||||| ||||||    
T  18733438 attaaccaaatatatggtttgtgttaccacattttattcggttgcgtgactactatt 18733494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 19280159 - 19280195
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttc 211  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  19280159 ttaaccaaatatatggtctgagtgaccacattttttc 19280195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 27335360 - 27335404
Alignment:
Q  185 atatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||    
T  27335360 atatggtatgtgtgaccacatttttttagttgcgtgacaactatt 27335404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 34164325 - 34164353
Alignment:
Q  180 caaatatatggtctgtgtgaccacatttt 208  Q
    |||||||||||||||||||||||||||||    
T  34164325 caaatatatggtctgtgtgaccacatttt 34164353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 10825 - 10750
Alignment:
Q  100 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    |||||||||||||  |||  |||| |||||||| ||||||||| |||||||||||||| ||||||| |||||||||    
T  10825 aataaagataggtaaacatccttaatatgtacattcctttgtaccactctagaaaatttcaattaaccaaatatat 10750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 13767102 - 13767177
Alignment:
Q  100 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    ||||| |||| ||||||||||| | | |||||||||||||||||||||||||||||||  | |||| |||||||||    
T  13767102 aataatgataagttgacactctaaatgtgtacactcctttgtatcactctagaaaatttaagttaaccaaatatat 13767177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 23595121 - 23595169
Alignment:
Q  181 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||||    
T  23595121 aaatatatggtctgtgtgaccatatttttttagttgtgtgacaactatt 23595169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 2430705 - 2430651
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||| |||||||||||| ||||||||||||||||||| |||| ||||| ||||||    
T  2430705 ttaaccaaatatatggtttgtgtgaccacattttttcagttgcgtgaccactatt 2430651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 3222585 - 3222551
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttt 209  Q
    |||||||||||||||||||||||||||||||||||    
T  3222585 ttaatcaaatatatggtctgtgtgaccacattttt 3222551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 9068558 - 9068504
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    ||||||||||||||||| ||||||||||||||||||  |||| ||||| ||||||    
T  9068558 ttaatcaaatatatggtatgtgtgaccacatttttttagttgcgtgaccactatt 9068504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 15341908 - 15341859
Alignment:
Q  180 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||||||||||||||||||||||  | |||||||| ||||||    
T  15341908 caaatatatggtctgtgtgaccacattttttaaggtgtgtgaccactatt 15341859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 10304842 - 10304802
Alignment:
Q  181 aaatatatggtctgtgtgaccacattttttcggttgtgtga 221  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  10304842 aaatatatggtctgtgtgaccacattttttcagttgcgtga 10304802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 33815158 - 33815110
Alignment:
Q  181 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||| |||||||||||||||||||||| |||| ||||| ||||||    
T  33815158 aaatatatagtctgtgtgaccacattttttcagttgcgtgaccactatt 33815110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 11108125 - 11108160
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttt 209  Q
    ||||| ||||||||||||||||||||||||||||||    
T  11108125 attaaccaaatatatggtctgtgtgaccacattttt 11108160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 3222397 - 3222446
Alignment:
Q  180 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||| | ||||||||||||||||| |||| ||||| ||||||    
T  3222397 caaatatatggtgtctgtgaccacattttttcagttgcgtgaccactatt 3222446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 11108225 - 11108177
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgac 222  Q
    ||||| |||||||||| | ||||||||||||||||||| |||| |||||    
T  11108225 attaaccaaatatatgatttgtgtgaccacattttttcagttgcgtgac 11108177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 23595295 - 23595259
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacatttttt 210  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  23595295 attaaccaaatatatagtctgtgtgaccacatttttt 23595259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 38244849 - 38244801
Alignment:
Q  180 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactat 228  Q
    |||||||||||||||||||||||||||||||| |||| ||||| |||||    
T  38244849 caaatatatggtctgtgtgaccacattttttcagttgcgtgaccactat 38244801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 2995962 - 2996007
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtg 220  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  2995962 attaatcaaatatatggt-tgtgtgaccacattttttcagttgtgtg 2996007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 5855072 - 5855114
Alignment:
Q  180 caaatatatggtctgtgtgaccacattttttcggttgtgtgac 222  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  5855072 caaatatatggtctgtgtgaccacatattttcagttgtgtgac 5855114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 9929919 - 9929871
Alignment:
Q  181 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||||||||||||||||||||||  ||| ||||| ||||||    
T  9929919 aaatatatggtctgtgtgaccacattttttcatttgcgtgaccactatt 9929871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 17227499 - 17227551
Alignment:
Q  180 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactattctt 232  Q
    |||||||||||||||||||||||||||||||  | || ||||| |||||||||    
T  17227499 caaatatatggtctgtgtgaccacattttttaaggtgcgtgaccactattctt 17227551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 34490335 - 34490289
Alignment:
Q  181 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaacta 227  Q
    ||||||||||||||||||||||||||||||  |||| ||||| ||||    
T  34490335 aaatatatggtctgtgtgaccacatttttttagttgcgtgaccacta 34490289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 42604371 - 42604325
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtga 221  Q
    ||||||||||||||||| |||||||||||||| |||  |||||||||    
T  42604371 ttaatcaaatatatggtttgtgtgaccacattgttttagttgtgtga 42604325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 5831686 - 5831633
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaacta 227  Q
    ||||| ||||||||||||||||||||||| |||||||  |||| ||||| ||||    
T  5831686 attaaccaaatatatggtctgtgtgaccatatttttttagttgcgtgaccacta 5831633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 24708074 - 24708103
Alignment:
Q  181 aaatatatggtctgtgtgaccacatttttt 210  Q
    ||||||||||||||||||||||||||||||    
T  24708074 aaatatatggtctgtgtgaccacatttttt 24708103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 5831720 - 5831672
Alignment:
Q  127 tgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    ||||||| |||||||||||||||  |||||| ||||||| |||||||||    
T  5831720 tgtacacccctttgtatcactctgaaaaatttcaattaaccaaatatat 5831672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 25238629 - 25238577
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaacta 227  Q
    ||||||||||||||||| | ||||||||||||||||  ||| |||||| ||||    
T  25238629 ttaatcaaatatatggtttctgtgaccacatttttttagttatgtgactacta 25238577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 34490156 - 34490203
Alignment:
Q  181 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    ||||||||||||||||||| ||||||||||| ||||| |||| ||||||    
T  34490156 aaatatatggtctgtgtga-cacattttttcagttgtatgaccactatt 34490203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 22740117 - 22740152
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacatttttt 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  22740117 ttaatcaaatatatggtctgtgtgaccacatttttt 22740152  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 15958269 - 15958323
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||| ||||||||||||| |||||||||||||||||  |||||||||| ||||||    
T  15958269 ttaaccaaatatatggtcagtgtgaccacatttttttagttgtgtgaccactatt 15958323  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 20556727 - 20556781
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||| ||||||||||||| ||||||||| |||||||| |||||||||| ||||||    
T  20556727 ttaaccaaatatatggtcggtgtgaccatattttttcagttgtgtgaccactatt 20556781  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 5083749 - 5083784
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacatttttt 210  Q
    ||||||||||||||||||| ||||||||||||||||    
T  5083749 ttaatcaaatatatggtctttgtgaccacatttttt 5083784  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 5083936 - 5083885
Alignment:
Q  178 atcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||||| |||||||||||||||||||  ||| ||||| ||||||    
T  5083936 atcaaatatatggtatgtgtgaccacattttttcaattgcgtgaccactatt 5083885  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 18312726 - 18312801
Alignment:
Q  100 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    ||||||||| ||| ||||| ||||   |||| || |||||||| |||||| ||||||| |||||||||||||||||    
T  18312726 aataaagattggtagacacccttaacgtgtatacccctttgtaccactctcgaaaatttcaattaatcaaatatat 18312801  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 18312787 - 18312842
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||||||||||| ||||||||||| ||||| |||| || || ||||||    
T  18312787 attaatcaaatatatggtctctgtgaccacatattttcagttgcgtcactactatt 18312842  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 22033213 - 22033154
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactattcttca 234  Q
    |||| ||||||||||||||||||||||| |||||||  |||| ||||| |||||| ||||    
T  22033213 ttaaccaaatatatggtctgtgtgaccatattttttgagttgcgtgaccactatttttca 22033154  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 27523441 - 27523496
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||||||| ||||||||| ||||||||||  ||||||| || ||||||    
T  27523441 attaatcaaatatatgatctgtgtgatcacatttttttagttgtgtaactactatt 27523496  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 21589771 - 21589741
Alignment:
Q  180 caaatatatggtctgtgtgaccacatttttt 210  Q
    |||||||||||||||||||||||||||||||    
T  21589771 caaatatatggtctgtgtgaccacatttttt 21589741  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 28805171 - 28805125
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtga 221  Q
    |||| |||||||||||| ||||||||||||||||||| |||| ||||    
T  28805171 ttaaccaaatatatggtatgtgtgaccacattttttcagttgcgtga 28805125  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 400
Target Start/End: Original strand, 45866561 - 45866599
Alignment:
Q  362 ccttgtgggagatatattctctcaaaagtaactcttgga 400  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  45866561 ccttgtgggagatatattctttgaaaagtaactcttgga 45866599  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 28804887 - 28804956
Alignment:
Q  106 gataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    ||||||| ||||| |||| ||||||||| | |||||| || ||||||||||| || |||| |||||||||    
T  28804887 gataggtagacacccttaatatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatat 28804956  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 15958456 - 15958428
Alignment:
Q  181 aaatatatggtctgtgtgaccacattttt 209  Q
    |||||||||||||||||||||||||||||    
T  15958456 aaatatatggtctgtgtgaccacattttt 15958428  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 20556916 - 20556868
Alignment:
Q  181 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||| |||||| |||||||||||||| ||||| ||||| ||||||    
T  20556916 aaatatatagtctgtttgaccacatttttttggttgagtgaccactatt 20556868  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 21589586 - 21589630
Alignment:
Q  177 aatcaaatatatggtctgtgtgaccacattttttcggttgtgtga 221  Q
    |||||||||||| |||| |||||||| |||||||| |||||||||    
T  21589586 aatcaaatatattgtctatgtgaccatattttttcagttgtgtga 21589630  T

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Target: scaffold0126 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 21621 - 21575
Alignment:
Q  182 aatatatggtctgtgtgaccacattttttcggttgtgtgacaactat 228  Q
    |||||||||||||||||||||||||||||| |||| ||||| |||||    
T  21621 aatatatggtctgtgtgaccacattttttcagttgcgtgaccactat 21575  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 31596756 - 31596810
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    ||||||||||||||||| ||||||||||||||||||| |||| || || ||||||    
T  31596756 ttaatcaaatatatggtatgtgtgaccacattttttcagttgcgttaccactatt 31596810  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 40502437 - 40502388
Alignment:
Q  180 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||||||||||||||||||||||  | |||||||| ||||||    
T  40502437 caaatatatggtctgtgtgaccacattttttaaggtgtgtgaccactatt 40502388  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 5322145 - 5322097
Alignment:
Q  127 tgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    |||||||||||||||||||||||  |||||| ||||||| |||||||||    
T  5322145 tgtacactcctttgtatcactctcaaaaatttcaattaaccaaatatat 5322097  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 15714837 - 15714789
Alignment:
Q  181 aaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    ||||||||||||||||| ||||||||||||| | |||||||| ||||||    
T  15714837 aaatatatggtctgtgtaaccacattttttcagctgtgtgactactatt 15714789  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 31596694 - 31596769
Alignment:
Q  100 aataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    ||||||||| ||| |||||||||| |||||||||  ||||||| |||| |  |||||| || ||||||||||||||    
T  31596694 aataaagattggtagacactcttaatatgtacacctctttgtaccactttgaaaaattacagttaatcaaatatat 31596769  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 6809949 - 6809895
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||||||||||||| || |||||||||||||||||   ||||||||| |||||||    
T  6809949 ttaatcaaatatatagtatgtgtgaccacatttttatagttgtgtgataactatt 6809895  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 40502225 - 40502195
Alignment:
Q  180 caaatatatggtctgtgtgaccacatttttt 210  Q
    |||||||||||||||||||||||||||||||    
T  40502225 caaatatatggtctgtgtgaccacatttttt 40502195  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 5322111 - 5322074
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttttc 211  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  5322111 attaaccaaatatatggtctgtgtgatcacattttttc 5322074  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 33286177 - 33286214
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttttc 211  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  33286177 attaaccaaatatatggtctgcgtgaccacattttttc 33286214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 31273711 - 31273663
Alignment:
Q  174 attaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgac 222  Q
    |||||||||||||||||||| |||| |||||| ||||| |||| |||||    
T  31273711 attaatcaaatatatggtctatgtggccacatgttttcagttgcgtgac 31273663  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 31273777 - 31273697
Alignment:
Q  95 aatataataaagataggttgacactcttagtatgtacactcctttgtatcactctagaaaattccaattaatcaaatatat 175  Q
    |||| ||||||||| ||| || ||||||| | |||| ||   |||||| |||||| ||||||| |||||||||||||||||    
T  31273777 aatagaataaagattggtagatactcttaatgtgtatacctttttgtaccactctcgaaaatttcaattaatcaaatatat 31273697  T

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Target: scaffold0213 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 24981 - 24932
Alignment:
Q  180 caaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    ||||||||| |||||||||||||||| ||||| |||||||||| ||||||    
T  24981 caaatatatagtctgtgtgaccacatgttttcagttgtgtgaccactatt 24932  T

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Target: scaffold1126 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 357 - 303
Alignment:
Q  175 ttaatcaaatatatggtctgtgtgaccacattttttcggttgtgtgacaactatt 229  Q
    |||| ||||||||||||||||||| ||||| |||||| |||| ||||| ||||||    
T  357 ttaaccaaatatatggtctgtgtggccacactttttcagttgcgtgaccactatt 303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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