View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0641_high_8 (Length: 422)

Name: NF0641_high_8
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0641_high_8
NF0641_high_8
[»] chr4 (6 HSPs)
chr4 (30-415)||(46734339-46734724)
chr4 (236-370)||(55261611-55261745)
chr4 (198-408)||(34104919-34105131)
chr4 (271-351)||(8081726-8081806)
chr4 (212-310)||(21393758-21393856)
chr4 (304-370)||(56337951-56338017)
[»] chr1 (3 HSPs)
chr1 (56-407)||(27393842-27394194)
chr1 (314-404)||(48380418-48380510)
chr1 (193-257)||(33576012-33576076)
[»] chr5 (6 HSPs)
chr5 (47-320)||(35636985-35637258)
chr5 (76-285)||(34337589-34337798)
chr5 (146-370)||(18893113-18893337)
chr5 (298-370)||(24177234-24177306)
chr5 (199-370)||(34317625-34317796)
chr5 (199-256)||(34874787-34874844)
[»] chr7 (4 HSPs)
chr7 (56-408)||(39474225-39474580)
chr7 (193-408)||(33821864-33822081)
chr7 (195-370)||(8753732-8753907)
chr7 (193-284)||(23897987-23898078)
[»] chr6 (7 HSPs)
chr6 (173-408)||(29824254-29824491)
chr6 (37-100)||(20347795-20347858)
chr6 (196-318)||(17749158-17749280)
chr6 (296-370)||(1364693-1364767)
chr6 (233-343)||(29520589-29520699)
chr6 (47-120)||(29824521-29824594)
chr6 (46-110)||(14687203-14687267)
[»] chr2 (6 HSPs)
chr2 (79-351)||(33280729-33281001)
chr2 (58-284)||(7300384-7300610)
chr2 (39-120)||(18634836-18634917)
chr2 (46-113)||(32624232-32624299)
chr2 (296-390)||(18634564-18634660)
chr2 (46-110)||(144219-144283)
[»] chr8 (3 HSPs)
chr8 (39-339)||(42240076-42240376)
chr8 (235-370)||(7671066-7671201)
chr8 (289-351)||(32095768-32095830)
[»] chr3 (5 HSPs)
chr3 (40-285)||(21548228-21548472)
chr3 (52-113)||(4964241-4964302)
chr3 (52-116)||(14307118-14307182)
chr3 (245-409)||(43171392-43171557)
chr3 (288-332)||(30793596-30793640)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 415
Target Start/End: Original strand, 46734339 - 46734724
Alignment:
Q  30 cggacacggcgaatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgac 129  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  46734339 cggacacggcgaatcagcatctcatctgtttcttcattgcgacatttttggttccttgtgacagcatatcaagtcttggattggcgtttcaagagtcaac 46734438  T
Q  130 ccgcatagtctttgtcatcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgttt 229  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  46734439 cctcatagtcttcgtcatcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttctttagcttatatggcttctatgcgttt 46734538  T
Q  230 ggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgact 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  46734539 ggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaatttaaatataattcttattggtggct 46734638  T
Q  330 gaaagctaacaatgtcacttttttgtatggttctcagagattgttcggaccctttgttatgcttgagtatcggctgacctatgata 415  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  46734639 gaaagctaacaatgtcacttttgtgtatggttttcagagattgttcggaccctttgttatgcttgaatatcggctgacctttgata 46734724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 370
Target Start/End: Complemental strand, 55261745 - 55261611
Alignment:
Q  236 tttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagc 335  Q
    |||||||||  |||||||||||  || |||||||| | |||||| | || | ||||||||| || ||||||||||   ||||||||| ||| ||||||||    
T  55261745 tttggaatgctcgtaataacatgatctttaataacgtccaaactacaattagagagcttattgaaaaagttaaattccattcttattcgtggctgaaagc 55261646  T
Q  336 taacaatgtcacttttttgtatggttctcagagat 370  Q
    |||||| | ||||||| ||||||||||||||||||    
T  55261645 taacaaagccacttttgtgtatggttctcagagat 55261611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 198 - 408
Target Start/End: Complemental strand, 34105131 - 34104919
Alignment:
Q  198 ttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttata 297  Q
    ||||||||| |||  ||||||||| ||| |||| |||||||||||||||||||||||||   || | |||||  | ||||||||||| ||||  |||||     
T  34105131 ttttcttcaacttccatggcttctttgcatttgactagtttggaatgaacgtaataacaagttcttcaataatgtccaaactcccattatagctcttatg 34105032  T
Q  298 gacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat--tgttcggaccctttgttatgcttga 395  Q
    || ||||| ||  |||||| | |||||||  |||| || || |||| |  |||| | ||||||||||||||||  || ||||||||||||||||| |||     
T  34105031 gaaaaagtgaagcataattttgattggtggttgaaggcgaataatgcctgttttgtatatggttctcagagatggtggtcggaccctttgttatgtttgg 34104932  T
Q  396 gtatcggctgacc 408  Q
    |||||| ||||||    
T  34104931 gtatcgactgacc 34104919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 8081806 - 8081726
Alignment:
Q  271 attcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcactttt 351  Q
    |||||| || |||| ||||| ||| |||| || ||||||||||| | || |||||| ||||||||||||||||||| ||||    
T  8081806 attcaagctaccatgatagaacttttagaaaaggttaaatataactttttttggtggctgaaagctaacaatgtcaatttt 8081726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 310
Target Start/End: Original strand, 21393758 - 21393856
Alignment:
Q  212 tatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaat 310  Q
    ||||||| || || ||||||||||| ||||||||||||||||| | |||  |||||||   ||| |||||||| | ||||||||| || || |||||||    
T  21393758 tatggctcctttgtgtttggctagtgtggaatgaacgtaataatagactatttaataattctcacactcccattacagagcttatggataaggttaaat 21393856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 56337951 - 56338017
Alignment:
Q  304 gttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 370  Q
    |||||||||| |||||  ||||| || ||||||||||||| ||||||| | ||||||||||| ||||    
T  56337951 gttaaatatacttctttgtggtggctaaaagctaacaatgccacttttgtttatggttctcaaagat 56338017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 56 - 407
Target Start/End: Original strand, 27393842 - 27394194
Alignment:
Q  56 tgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttat 155  Q
    ||||||| ||| |||| || ||||| || || |||||||||  || ||||||| |||| |||||| |||| || || |||||| || |  ||||||||||    
T  27393842 tgtttctgcatcgcgatatatttggatcattatggcagcatgccaggtcttggtttggtgtttcaggagtagaaccacatagtattcgagatcattttat 27393941  T
Q  156 tcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataac 255  Q
    ||| |||||||| ||  |||||| || |||| |  |  | ||||||||||| ||| |||||||||| ||| ||||| ||||||||||||||||| |||||    
T  27393942 tcactttactcattatctaggtggtttgaaggcgaggtgctcttttcttcaacttttatggcttctttgcatttggttagtttggaatgaacgttataac 27394041  T
Q  256 atactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgt 355  Q
    ||  |  | ||||| || ||||||||||||||||| ||||  || |||||||| |||| ||||||||||||  |||| ||||| |||||||||||| | |    
T  27394042 atgttattaaataatatccaaactcccatcatagatctta-ggaaaaagttaagtatacttcttattggtggttgaaggctaataatgtcacttttgtat 27394140  T
Q  356 atggttctcagagat--tgttcggaccctttgttatgcttgagtatcggctgac 407  Q
    |||| |||||| |||  || |||||||| |||||||||||| ||||||||||||    
T  27394141 atggctctcagtgatggtggtcggacccattgttatgcttgggtatcggctgac 27394194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 404
Target Start/End: Complemental strand, 48380510 - 48380418
Alignment:
Q  314 attcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat--tgttcggaccctttgttatgcttgagtatcggct 404  Q
    ||||||||||||| || ||||||||||| | |||| || ||||||||||| ||||||  || |||||| |||||||||| ||| |||||||||    
T  48380510 attcttattggtggctaaaagctaacaacgccactcttgtgtatggttcttagagatggtggtcggactctttgttatgtttgggtatcggct 48380418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 33576076 - 33576012
Alignment:
Q  193 cgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacat 257  Q
    ||||| ||||| |||||| |||||||| |||| |||||||  ||||||||||||| |||||||||    
T  33576076 cgatcgtttctacagcttttatggcttttgtgtgtttggcaggtttggaatgaacataataacat 33576012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 47 - 320
Target Start/End: Complemental strand, 35637258 - 35636985
Alignment:
Q  47 catctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtca 146  Q
    |||||||| ||||||||||||||||||| ||||| ||||| | ||||||| ||| |||||||||||| |||| | || | || || || ||||| ||| |    
T  35637258 catctcatttgtttcttcattgcgacatgtttggctccttatagcagcatgtcaggtcttggattggtgttttaggactagatcctcagagtctctgtga 35637159  T
Q  147 tcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaa 246  Q
    ||||||||||||||| ||| | ||  |||||| |||||   ||| ||||||||||||||| ||| ||||  | || || ||||| |||||||||| ||||    
T  35637158 tcattttattcagttcacttattatctaggtggttcgagagctcaacgatcttttcttcaccttttatgtttgctttgtgtttgactagtttggagtgaa 35637059  T
Q  247 cgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattctta 320  Q
     ||| |||||   || ||||||| |||||||||||||||||| || |||| || |||||||| |||||||||||    
T  35637058 tgtattaacaagttctttaataatattcaaactcccatcatatagattatggataaagttaagtataattctta 35636985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 285
Target Start/End: Complemental strand, 34337798 - 34337589
Alignment:
Q  76 tttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttattcagtttactcactacatag 175  Q
    ||||||||||||||||||||| ||| ||||||||||| | ||||| | |  ||||| || | | ||  | |||| ||||| || || ||||| |||||||    
T  34337798 tttggttccttgtggcagcatgtcaggtcttggattgacatttcaggtgctgaccctcaaaatattcatgatcactttatccaattaactcattacatag 34337699  T
Q  176 gtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattca 275  Q
    || | |||| |||||    ||| |||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||||| ||  ||| |||||| ||    
T  34337698 gtcactcgaggactcacaaatcatttcttcagcttgtttggcttctgtgcatttggctagtttggactgaacgtaataacatgctatttagtaacatcca 34337599  T
Q  276 aactcccatc 285  Q
    ||||||||||    
T  34337598 aactcccatc 34337589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 146 - 370
Target Start/End: Complemental strand, 18893337 - 18893113
Alignment:
Q  146 atcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatga 245  Q
    ||||||| || ||||||||||||||  |||||| ||||||| |  | |||||||||||||| ||  |||||||||| ||||| |||||||||||||||||    
T  18893337 atcatttcatacagtttactcactatttaggtggttcgaaggcgaggcgatcttttcttcaactattatggcttctttgcgtatggctagtttggaatga 18893238  T
Q  246 acgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtc 345  Q
     |||||||| |   |  | |||||    ||||||||||| ||||  ||||| || ||||| ||| |||||||||||||||| ||||| || || || | |    
T  18893237 gcgtaataataggttgttcaataatgcccaaactcccattatagctcttatggaaaaagtgaaacataattcttattggtggctgaaggcaaataacgcc 18893138  T
Q  346 acttttttgtatggttctcagagat 370  Q
     ||||| | ||||||||||||||||    
T  18893137 tcttttgtatatggttctcagagat 18893113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 298 - 370
Target Start/End: Complemental strand, 24177306 - 24177234
Alignment:
Q  298 gacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 370  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||||    
T  24177306 gacaaagttaaacttaattcttattggtggctgaaagctaacaaagccacttttatgtatggttctcagagat 24177234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 199 - 370
Target Start/End: Original strand, 34317625 - 34317796
Alignment:
Q  199 tttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatag 298  Q
    |||||||||||| | |||||| | ||| ||||||||||||||| || |||||| ||||  ||  |||||||||| |||||||||||| || |  |  | |    
T  34317625 tttcttcagcttgtctggcttttttgcatttggctagtttggactggacgtaacaacaagctatttaataacatccaaactcccatcttacaaatcttgg 34317724  T
Q  299 acaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 370  Q
    | || |||||| |||||||||||||||   |||||||||||||   ||||||||| |  |||||||||||||    
T  34317725 aaaaggttaaacataattcttattggttgttgaaagctaacaacaccacttttttattcggttctcagagat 34317796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 34874787 - 34874844
Alignment:
Q  199 tttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataaca 256  Q
    |||||||||||||| |||||  ||||||||||| |  | |||||||||||||||||||    
T  34874787 tttcttcagcttatttggctcttgtgcgtttgggttttatggaatgaacgtaataaca 34874844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 56 - 408
Target Start/End: Original strand, 39474225 - 39474580
Alignment:
Q  56 tgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttat 155  Q
    ||||||||||||| |||||||| || || ||||| |||||  ||| || ||||||||  |||||| |||  || || |||||| || |  ||||||| ||    
T  39474225 tgtttcttcattgtgacattttcggatctttgtgacagcaagtcaggttttggattgatgtttcaggagcagaaccacatagtattcgggatcatttcat 39474324  T
Q  156 tcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataac 255  Q
     ||||||||||| ||  |||||| ||||||| |  |||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  39474325 acagtttactcattatctaggtggttcgaaggcgagacgttcttttcttcaacttttatggcttctttgcgtttggctagtttggaatgaacgtaataac 39474424  T
Q  256 atactcattaataacattcaaactcccatcatagagcttatag-acaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttg 354  Q
    |   || | |||||  | ||||||||||| ||||  ||||| | | ||||| ||  ||||||||||||||||  |||| || || ||   | ||||| |     
T  39474425 aagttcttcaataatgtccaaactcccattatagctcttatggaaaaaagtgaagcataattcttattggtggttgaaggcgaataacacctcttttata 39474524  T
Q  355 tatggttctcagagat--tgttcggaccctttgttatgcttgagtatcggctgacc 408  Q
    ||||||||||||||||  || ||||||||||||||||||||| |||| | ||||||    
T  39474525 tatggttctcagagatggtggtcggaccctttgttatgcttgggtattgactgacc 39474580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 408
Target Start/End: Original strand, 33821864 - 33822081
Alignment:
Q  193 cgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagc 292  Q
    ||||| ||||| |||||| |||||||| |||| |||||||  ||||||||||| ||||||||||   |  |||||||||| |||   ||||| ||  |||    
T  33821864 cgatcgtttctacagcttttatggcttttgtgagtttggcaggtttggaatgagcgtaataacaggatttttaataacatccaagtccccattattcagc 33821963  T
Q  293 ttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagattgt--tcggaccctttgttatg 390  Q
    || |||| | |||||||||  | || | |||||| ||||| ||||| |||||||||||  |||| |||||||| |||| ||  |||||||||||| | ||    
T  33821964 ttttagatagagttaaataccactcattttggtggctgaaggctaataatgtcactttcatgtacggttctcatagatggtagtcggaccctttgatttg 33822063  T
Q  391 cttgagtatcggctgacc 408  Q
     ||| |||||| ||||||    
T  33822064 tttgggtatcgactgacc 33822081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 370
Target Start/End: Original strand, 8753732 - 8753907
Alignment:
Q  195 atcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagctt 294  Q
    |||||||||||||||||| |||||  || | || ||| | || |||||||| || |||||||  ||| |||||||||| ||||| || || ||  || ||    
T  8753732 atcttttcttcagcttatttggctgttgggtgtctggttggtgtggaatgagcgaaataacaagctctttaataacatccaaaccccaattattcagatt 8753831  T
Q  295 atagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 370  Q
     ||||| ||||||||| | |||| |||||||| || |||||||| |||| ||  ||| |||| |||| ||||||||    
T  8753832 ttagacgaagttaaatttcattcgtattggtggctcaaagctaaaaatgccatgtttgtgtacggttttcagagat 8753907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 284
Target Start/End: Complemental strand, 23898078 - 23897987
Alignment:
Q  193 cgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccat 284  Q
    ||||| ||||| | |||| |||||||| |||| ||||||| |||||||||||| |||||||||||  |  |||||||||| ||||| |||||    
T  23898078 cgatcgtttctacggcttttatggcttttgtgtgtttggcaagtttggaatgagcgtaataacatgatttttaataacatccaaacccccat 23897987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 173 - 408
Target Start/End: Complemental strand, 29824491 - 29824254
Alignment:
Q  173 taggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcatt-aataaca 271  Q
    |||||| ||||||| |  |||| ||||||||||| ||| |||||||||| ||| ||||| ||||||||||||||| |||||||| | | ||| ||||| |    
T  29824491 taggtggttcgaaggcgagacgctcttttcttcaacttttatggcttctttgcatttggttagtttggaatgaacataataaca-agttattcaataata 29824393  T
Q  272 ttcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat- 370  Q
    | ||||||||||||||||| ||||| || ||| |||| ||||||||||| |||||| ||||  |||| |||||||||||| | ||||| ||||||| ||     
T  29824392 tccaaactcccatcatagatcttatggaaaaaattaagtataattcttaatggtgattgaagactaataatgtcacttttgtatatggctctcagaaatg 29824293  T
Q  371 -tgttcggaccctttgttatgcttgagtatcggctgacc 408  Q
     || |||| ||| |||||||||||| |||||||||||||    
T  29824292 gtggtcggtcccattgttatgcttgggtatcggctgacc 29824254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 20347858 - 20347795
Alignment:
Q  37 ggcgaatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatca 100  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||    
T  20347858 ggcgaatcagcatctcatttgtttcttcattgcgacatgtttgattctttgtggcagcatatca 20347795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 318
Target Start/End: Original strand, 17749158 - 17749280
Alignment:
Q  196 tcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagctta 295  Q
    |||||| | |||||| | ||||||||| | || ||| ||||||||||||||||||| |||||  |  |||| || | ||||||| || | ||||| |||     
T  17749158 tcttttatgcagcttttttggcttctgggtgtgtggatagtttggaatgaacgtaacaacatggtatttaagaatactcaaactaccgtgatagatcttt 17749257  T
Q  296 tagacaaagttaaatataattct 318  Q
    |||| ||||||||||||||||||    
T  17749258 tagaaaaagttaaatataattct 17749280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 1364767 - 1364693
Alignment:
Q  296 tagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagat 370  Q
    ||||||||||||||| | |||| |||||||| || |||||||| |||||||  ||| |||||| |||||| ||||    
T  1364767 tagacaaagttaaatttcattcgtattggtggcttaaagctaaaaatgtcatgtttctgtatgattctcacagat 1364693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 343
Target Start/End: Complemental strand, 29520699 - 29520589
Alignment:
Q  233 tagtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaa 332  Q
    |||||||||||||||| || |||| | |  | || || ||||||||| |||| ||||| ||| |||| || ||||||||||| || | |||||| |||||    
T  29520699 tagtttggaatgaacgaaacaacaaaatattcaagaatattcaaactaccatgatagaacttttagaaaaggttaaatataactcattttggtggctgaa 29520600  T
Q  333 agctaacaatg 343  Q
    ||| |||||||    
T  29520599 agcaaacaatg 29520589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 29824594 - 29824521
Alignment:
Q  47 catctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttca 120  Q
    |||||||| ||||| | ||||| || |||||||| ||||||||||||||| |||  |||||| |||| ||||||    
T  29824594 catctcatttgtttttgcattgtgatatttttggatccttgtggcagcatgtcagatcttggtttggtgtttca 29824521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 14687203 - 14687267
Alignment:
Q  46 acatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggat 110  Q
    ||||||||||| ||| ||||||||  || ||||||||| |||||||| | ||||| |||||||||    
T  14687203 acatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttggat 14687267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 79 - 351
Target Start/End: Complemental strand, 33281001 - 33280729
Alignment:
Q  79 ggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttattcagtttactcactacataggtg 178  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| | |  |||||  | | | ||  | |||| ||||| || ||||| |||||||||||      
T  33281001 ggttccttgtggcagcatgtcaggtcttggattgacgtttcaggtgctgacccttaaaatattcatgatcactttatccaatttacgcactacataggca 33280902  T
Q  179 attcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacatactcattaataacattcaaac 278  Q
    ||||||  |||||  | || ||||||||| |||| |  ||| ||||| ||||||||||||||| |||||||||||||| |||| ||||||||||||||||    
T  33280901 attcgagaactcgcagttcatttcttcagattatttaacttatgtgcatttggctagtttggactgaacgtaataacagactctttaataacattcaaac 33280802  T
Q  279 tcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcactttt 351  Q
    ||||||  || ||||| | || || |||||| ||||||||| || |||  ||||||||||||| | |||||||    
T  33280801 tcccattgtacagcttctggaaaaggttaaagataattcttttttgtggttgaaagctaacaaagccactttt 33280729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 284
Target Start/End: Complemental strand, 7300610 - 7300384
Alignment:
Q  58 tttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtctttgtcatcattttattc 157  Q
    ||||||||||| |||| ||| ||||| ||||||||| |||||| |||||||||| | || ||| | || ||  | |||| | ||||| | ||||| ||||    
T  7300610 tttcttcattgtgacagtttcggttctttgtggcagtatatcatgtcttggattagtgtgtcaggtgttgatactcataatatttgtgagcatttcattc 7300511  T
Q  158 agtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttggaatgaacgtaataacat 257  Q
    ||||||||||||| |  ||| ||| || ||| || |||||||||||||||||||| ||||| || || || ||| | |||||||||||| | || |||      
T  7300510 agtttactcactatactggtcatttgatgacgcgtcgatcttttcttcagcttatttggctactttgtgtctggatggtttggaatgaatgcaacaacgg 7300411  T
Q  258 actcattaataacattcaaactcccat 284  Q
    |||  |||||||||| ||||| |||||    
T  7300410 actatttaataacatccaaacccccat 7300384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 18634917 - 18634836
Alignment:
Q  39 cgaatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttca 120  Q
    ||||||||| |||||| ||||||||||||| |||| ||| || || ||||||||| |||| | ||| |||||||||||||||    
T  18634917 cgaatcaacgtctcatttgtttcttcattgtgacagtttcggctctttgtggcagtatattaggtcgtggattggcgtttca 18634836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 32624299 - 32624232
Alignment:
Q  46 acatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattgg 113  Q
    ||||||||| | ||| ||||||||| || ||||||||| |||||||| | ||||| ||||||||||||    
T  32624299 acatctcatttatttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggattgg 32624232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 390
Target Start/End: Complemental strand, 18634660 - 18634564
Alignment:
Q  296 tagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcacttttttgtatggttctcagagattgt--tcggaccctttgttatg 390  Q
    |||| |||||||||| | |||  | ||||||||| |||||||| |||  ||| ||| ||||||| |||||||||| ||  |||||||||||||||||    
T  18634660 tagaaaaagttaaatttcatttgttttggtgacttaaagctaataataccacgtttgtgtatggctctcagagatggtggtcggaccctttgttatg 18634564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 144219 - 144283
Alignment:
Q  46 acatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggat 110  Q
    ||||||||||| ||| ||||||||  || ||||||||| |||||||| | ||||| |||||||||    
T  144219 acatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttggat 144283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 339
Target Start/End: Original strand, 42240076 - 42240376
Alignment:
Q  39 cgaatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagt 138  Q
    ||||||| || ||||| ||||| | ||||||||||| |||||||| || ||||||||||| | | |||||||||  |||||| |||| || ||  ||| |    
T  42240076 cgaatcagcacctcatatgtttatacattgcgacatatttggttcattatggcagcatataaggacttggattgctgtttcaggagttgatccttataat 42240175  T
Q  139 ctttgtcatcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagttt 238  Q
     || ||   |||||||||||||||||| |||   || |    ||  ||||| | || |||||| | || ||||| |||||| || |||||||| ||||||    
T  42240176 attcgtgcccattttattcagtttactaactctgtatgaacgtcacagacttgccgttcttttatgcaacttatttggcttttgggcgtttggatagttt 42240275  T
Q  239 ggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaa 338  Q
    ||||||||||||| |||||  || | |||||||| |||||| |||| ||||| ||  ||||||| |||||||||||||||| |||||  |||| ||||||    
T  42240276 ggaatgaacgtaacaacatgatcttcaataacatccaaacttccatgatagatctactagacaaggttaaatataattctttttggttgctgatagctaa 42240375  T
Q  339 c 339  Q
    |    
T  42240376 c 42240376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 7671201 - 7671066
Alignment:
Q  235 gtttggaatgaacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaag 334  Q
    ||||||||||| ||||| ||||| ||| |||| || ||| |||| || |||| |||| ||||||| || |||||||||||||||||||||||  ||||||    
T  7671201 gtttggaatgagcgtaacaacatgctctttaacaatattgaaaccccaatcaaagagattatagaaaaggttaaatataattcttattggtggttgaaag 7671102  T
Q  335 ctaacaatgtcacttttttgtatggttctcagagat 370  Q
    | ||||| | ||||||| ||||||||| | ||||||    
T  7671101 caaacaaagccacttttgtgtatggttttaagagat 7671066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 32095768 - 32095830
Alignment:
Q  289 gagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgtcactttt 351  Q
    |||||||| || |||||||||| ||||||||||||||  || ||||||||| | |||||||||    
T  32095768 gagcttattgaaaaagttaaatttaattcttattggtagctaaaagctaacgaagtcactttt 32095830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 285
Target Start/End: Original strand, 21548228 - 21548472
Alignment:
Q  40 gaatcaacatctcatctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgtttcaagagtcgacccgcatagtc 139  Q
    |||||||||  |||||| || || ||||||||  | ||||||||||| ||||||||| ||| ||||||||||| | ||||| | |  ||||| || | |     
T  21548228 gaatcaacaggtcatcttttcctacattgcgaattgtttggttccttatggcagcatgtcaggtcttggattgacatttcaggtgctgaccctcaaaata 21548327  T
Q  140 tttgtcatcattttattcagtttactcactacataggtgattcgaagactcgacgatcttttcttcagcttatatggcttctgtgcgtttggctagtttg 239  Q
    ||  | |||| ||||| || |||||||| ||||  ||| | |||| |||| |  |||| | ||||||||||   |||| | ||||| |||||||||||||    
T  21548328 ttcatgatcactttatccaatttactcattacagtggtcactcgaggacttgcagatcatatcttcagcttgcctggcatttgtgcatttggctagtttg 21548427  T
Q  240 gaatgaacgtaataacatactcattaataacattcaaactcccatc 285  Q
    || |||||||||||||| |||  ||||||| || ||||||||||||    
T  21548428 gactgaacgtaataacaaactatttaataa-atccaaactcccatc 21548472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 4964302 - 4964241
Alignment:
Q  52 catctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattgg 113  Q
    ||||||||||||||||||||  |||||||||| || |||||||||||||  || ||||||||    
T  4964302 catctgtttcttcattgcgaggtttttggttctttatggcagcatatcagatcatggattgg 4964241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 14307182 - 14307118
Alignment:
Q  52 catctgtttcttcattgcgacatttttggttccttgtggcagcatatcaagtcttggattggcgt 116  Q
    |||||||||||||||| |||| |||||||||| || ||||| || |||| ||| |||||||||||    
T  14307182 catctgtttcttcattacgacgtttttggttcgttatggcaacacatcaggtcatggattggcgt 14307118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 409
Target Start/End: Original strand, 43171392 - 43171557
Alignment:
Q  245 aacgtaataacatactcattaataacattcaaactcccatcatagagcttatagacaaagttaaatataattcttattggtgactgaaagctaacaatgt 344  Q
    ||||||| |||| |||| |||| || ||| ||||||| |||| | || |||| || || |||||||||||||  ||||||||  || |||| ||||| |     
T  43171392 aacgtaacaacagactctttaacaatattgaaactccaatcagaaagattatggaaaaggttaaatataatttctattggtggttg-aagcaaacaaagc 43171490  T
Q  345 cacttttttgtatggttctcagagat--tgttcggaccctttgttatgcttgagtatcggctgacct 409  Q
    ||||||| ||||||| ||||||||||  || ||||| || ||  | |||||| ||||||||||||||    
T  43171491 cacttttgtgtatggctctcagagatggtggtcggatccgttactttgcttgggtatcggctgacct 43171557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 30793596 - 30793640
Alignment:
Q  288 agagcttatagacaaagttaaatataattcttattggtgactgaa 332  Q
    |||||||||||| |||||||||| | ||||||||||||| |||||    
T  30793596 agagcttatagataaagttaaattttattcttattggtggctgaa 30793640  T

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