View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_13 (Length: 476)
Name: NF0641_low_13
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 11 - 476
Target Start/End: Original strand, 1464408 - 1464866
Alignment:
| Q |
11 |
cagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaagccaattgaatggttgaaaaagatttcagaagtggaaattattgttgaagagt |
110 |
Q |
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| T |
1464408 |
cagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaagccaattgaatggttgaaaaagatttcagaagtggaaattattgttgaagagt |
1464507 |
T |
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| Q |
111 |
aatgaattatgcggcataaacacttacaagtgaaagtgtgtctgtgtcctacaccgacaaataattacaatcaatcacttttatttattttttaaaatta |
210 |
Q |
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| T |
1464508 |
aatgaattatgcggcataaacactgacgagtgaaagtgtgtctgtgtcctacaccgacaaataattacaatcaatcacttttatttattttttaaaatta |
1464607 |
T |
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| Q |
211 |
ttatcagagtctacgtgttagtgtcgtatgtaatgtttatttgcgactgattcaatgtttaatgaatggacgtgtttcaggcttatggagcggaatactc |
310 |
Q |
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| T |
1464608 |
ttatcagagtctacgtgttagtgtcgtatgtaatgtttatttgcgactgattcaatgt-------atggacgtgtttcaggcttatggagcggaatactc |
1464700 |
T |
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| Q |
311 |
ttaagggtcgtgttgagtcggtagtgaagctgaagggcctcgacattgacacacttaatactaattattcaatttaggcaaagcctgaacaatcttgaag |
410 |
Q |
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| T |
1464701 |
ttaagggtcgtgttgagtcggtagtgaagctgaagggcctcgacattgacacacttaatactaattattcaatttaggcaaaggctgcacaatcttgaag |
1464800 |
T |
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| Q |
411 |
aattagttcaatatttttctcaggaaaaatattaataatgacgaagaaagactcagagacctaagc |
476 |
Q |
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| T |
1464801 |
aattggttcaatatttttctcaggaaaaatattaataatgacgaagaaagactcagagacctaagc |
1464866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 1491797 - 1491905
Alignment:
| Q |
11 |
cagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaagccaattgaatgg-ttgaaaaagatttcagaagtggaaattat-tgttgaaga |
108 |
Q |
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|||||||||||||||||| |||||||| ||||||| | ||||| ||| ||| || ||||| || ||||||||| ||||||||||| ||| | ||||||| |
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| T |
1491797 |
cagagattgcagagcaagacaagaaacatgctgaagttgcaagttaatccatttaaatggtttaaaaaagattaaagaagtggaaagtatgtattgaaga |
1491896 |
T |
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| Q |
109 |
gtaatgaat |
117 |
Q |
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| T |
1491897 |
gtaatgaat |
1491905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 212 - 414
Target Start/End: Original strand, 26792253 - 26792455
Alignment:
| Q |
212 |
tatcagagtctacgtgttagtgtcgtatgtaatgtttatttg----cgactgattcaatgtttaatgaatggacgtgtttcaggcttatggagcggaata |
307 |
Q |
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||||||||||||||||| |||||||||| |||||||| | || ||||||||||| ||| |||||||||| ||||| ||||||||||||| ||||| |
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| T |
26792253 |
tatcagagtctacgtgtcagtgtcgtatctaatgtttgtatgtgtgcgactgattcatagtt-aatgaatggatgtgttacaggcttatggagaagaata |
26792351 |
T |
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| Q |
308 |
ctcttaagggtcgtgttgagtcggtagtgaagctgaagggcctcgacattgacacacttaatactaattattcaatttaggcaaagcctgaacaatcttg |
407 |
Q |
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| T |
26792352 |
ctctaaagggccgtgttgagtcagtggtgaagct---cggacttgacattgagacaattaagcagaattatacaatataggaaaagcttgaacaatcttc |
26792448 |
T |
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| Q |
408 |
aagaatt |
414 |
Q |
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||||||| |
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| T |
26792449 |
aagaatt |
26792455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 26792120 - 26792250
Alignment:
| Q |
11 |
cagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaagccaattgaatggttgaaaaagatttcagaagtggaaattattgttgaagagt |
110 |
Q |
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| T |
26792120 |
cagaaattgcagatctagccaggaaacgtgccgaaattgcaaggtaagccacttgaatggttgaaaaa--------aagtggaaattattattgaagagt |
26792211 |
T |
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| Q |
111 |
aatgaattatgcggcataaacacttacaagtgaaagtgt |
149 |
Q |
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| T |
26792212 |
aatgaattatgtatcacaaacacttatgagtgaaagtgt |
26792250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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