View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_14 (Length: 474)
Name: NF0641_low_14
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_14 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0059 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 20 - 474
Target Start/End: Complemental strand, 12637796 - 12637342
Alignment:
| Q |
20 |
acatcatcaatgaacataaagaagctaagtcaaaagcaaaagaaggtgaagtagaggaagatctggtagatgttcttcaaaaatttcaaggtggtaatga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12637796 |
acatcatcaatgaacataaagaagctaagtcaaaagcaaaagaaggcgaagtagaggaagatctggtagatgttcttcaaaaatttcaaggtggtaatga |
12637697 |
T |
|
| Q |
120 |
tattgaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataagccttttgnnnnnnntaatgttttccataggccgc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
12637696 |
tattgaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataagccttttgaaaaaaataacgttttccataggccgc |
12637597 |
T |
|
| Q |
220 |
gacatatcaaggtttttggtgtatcagcaaacacgatataatcacgattcagattcttgattattgcaatatcaaagattgcgacgcaaccacaatttaa |
319 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12637596 |
gacatatcaaggtttttggtgtattagaaaacacgatataatcacgattcagattcttgattattgcaatatcaaagattgcgacgcaaccacaatttaa |
12637497 |
T |
|
| Q |
320 |
aaccttgcgattgatgctatcaaattatctcttttagactttagtagtcttttttgatatcctgatatatttttcaggacatgattggtgctggaggtga |
419 |
Q |
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||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12637496 |
aaccttgtgattgatgccaacaaattatctcttttagactttagtagtcttttttgaaatcctgatatatttttcaggacatcattggtgctggaggtga |
12637397 |
T |
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| Q |
420 |
aacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaaga |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12637396 |
aacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaaga |
12637342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 12610786 - 12610626
Alignment:
| Q |
30 |
tgaacataaagaagctaagtcaaaagcaaaagaa------ggtgaagtagaggaagatctggtagatgttcttcaaaaatttcaaggtggtaatgatatt |
123 |
Q |
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||||||||||||||| |||||||||||||| ||| |||| || ||| |||||||||||||| ||||||| |||||| |||||||||||||| | |
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| T |
12610786 |
tgaacataaagaagcaaagtcaaaagcaaatgaaagtcaaggtggagaagaagaagatctggtagacgttcttctaaaattccaaggtggtaatgacagc |
12610687 |
T |
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| Q |
124 |
gaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataa |
184 |
Q |
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||||||||||||| |||||||| |||||||||||| |||||||||||||||| ||||||| |
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| T |
12610686 |
aaccaagatatatgtttaactgataacaatatcaagtctataatcctggtaaggataataa |
12610626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 15885252 - 15885422
Alignment:
| Q |
20 |
acatcatcaatgaacataaagaagctaagtcaaaagcaaaagaaggt------gaagtagaggaagatctggtagatgttcttcaaaaatttcaaggtgg |
113 |
Q |
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||||||||| ||||||||||||||| || ||||||||||||||| | |||| ||| |||||| |||| || ||||||| ||||| ||| || | |
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| T |
15885252 |
acatcatcattgaacataaagaagcaaattcaaaagcaaaagaatgccaagaagaagcagaagaagatttggttgacgttcttctaaaataccaacgtcg |
15885351 |
T |
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| Q |
114 |
taatgatattgaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataa |
184 |
Q |
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||||||| ||| ||||||||||||||||||||||||| ||||||||| || |||| ||||| ||||||| |
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| T |
15885352 |
caatgataatgaaaaagatatatgcttaactgacaacaacatcaaggctgtactcctagtaaggataataa |
15885422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 468
Target Start/End: Original strand, 15885534 - 15885612
Alignment:
| Q |
390 |
ttttcaggacatgattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggat |
468 |
Q |
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||||||||||||| ||||||||||||| || ||||| || |||||||||||||||||||||||||| ||||||||| |
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| T |
15885534 |
ttttcaggacatgtttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagggat |
15885612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 468
Target Start/End: Complemental strand, 12610319 - 12610255
Alignment:
| Q |
404 |
ttggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggat |
468 |
Q |
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|||||||||||||||| |||||| | |||| ||||||||||||||| ||||||| ||||||||| |
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| T |
12610319 |
ttggtgctggaggtgatacatcagcttctactatagtttgggcaatgtcagagttggtaagggat |
12610255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 62917 - 62762
Alignment:
| Q |
32 |
aacataaagaagctaagtcaaaagcaaaagaaggtgaa---gtagaggaagatctggtagatgttcttcaaaaatttcaaggtggtaatgatattgacca |
128 |
Q |
| |
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||||||||||||| |||| ||||| ||||||||| || | || |||||||||||||| ||||||| ||| ||||| |||||| |||| | ||||| |
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| T |
62917 |
aacataaagaagcaaagttaaaagaaaaagaaggacaaactgaagcagaagatctggtagacgttcttctaaagtttcagggtggtgatgacagcgacca |
62818 |
T |
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| Q |
129 |
agatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataa |
184 |
Q |
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|||||||| ||| || |||||||||| ||||||||| || ||||||||||||||| |
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| T |
62817 |
agatatatccttgaccaacaacaatattaaggctatactcttggtaagtataataa |
62762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 62581 - 62497
Alignment:
| Q |
390 |
ttttcaggacatgattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaaga |
474 |
Q |
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|
||||||||||||| |||||||||||||||| |||||| | | | |||||||||||||||||||||| ||||| ||||||||| |
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| T |
62581 |
ttttcaggacatgtttggtgctggaggtgatacatcagctttgagcgtagtttgggcaatggcagagttggtaagagatccaaga |
62497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 21780241 - 21780157
Alignment:
| Q |
390 |
ttttcaggacatgattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaaga |
474 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| | | ||||||| ||||||||||| ||| | ||||||||||||||| |
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| T |
21780241 |
ttttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatggtaagggatccaaga |
21780157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 23036598 - 23036514
Alignment:
| Q |
390 |
ttttcaggacatgattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaaga |
474 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| | | ||||||| ||||||||||||||| | |||||| |||||||| |
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| T |
23036598 |
ttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaaga |
23036514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 455
Target Start/End: Complemental strand, 23024703 - 23024635
Alignment:
| Q |
387 |
tatttttcaggacatgattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcaga |
455 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| |||||| | | ||||||| ||||||||||||||| |
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|
| T |
23024703 |
tattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcaga |
23024635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 23140477 - 23140390
Alignment:
| Q |
387 |
tatttttcaggacatgattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaaga |
474 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| |||||| | | ||||||| ||||||||||| ||| | |||||||||||||| |
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|
| T |
23140477 |
tattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaaga |
23140390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 23149189 - 23149102
Alignment:
| Q |
387 |
tatttttcaggacatgattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaaga |
474 |
Q |
| |
|
|||| |||||||||| ||||||||||||| || |||||| | | ||||||| ||||||||||| |||| | |||| |||||||||| |
|
|
| T |
23149189 |
tattgttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcaatggtagagatggtaaaggatccaaga |
23149102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 474
Target Start/End: Complemental strand, 23146344 - 23146264
Alignment:
| Q |
394 |
caggacatgattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaaga |
474 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||| | | ||||||| ||||||||||| ||| || |||| |||||||||| |
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| T |
23146344 |
caggacatttttgctgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaattggtaaaggatccaaga |
23146264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 6326 - 6391
Alignment:
| Q |
390 |
ttttcaggacatgattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcaga |
455 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||||| | || ||||||| ||||||||||||||| |
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|
| T |
6326 |
tttttaggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatggcaga |
6391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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