View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0641_low_15 (Length: 467)
Name: NF0641_low_15
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 4946190 - 4946434
Alignment:
| Q |
19 |
taaagcttaaattctcaaaaggacgtgctaaaatgatgttgcaannnnnnnnnnnntataagatgaccatagaacccatagtttgactaaatttaacgag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4946190 |
taaagcttaaattctcaaaaggacgtgctaaaatgatgttgcaaagagagag----tataagatgactatagaacccatagtttgactaaatttaacgag |
4946285 |
T |
|
| Q |
119 |
tgaaaagggatcagccacattataaacaatattaatccatttcacacgtgtataatttaagtcatcacccgagtattatgcgtgtattgtgactctatat |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4946286 |
tgaaaagggatcagccgcattataaacaatattaatccatttcacacgtgtataatttaagtcatcacccgagtattatgcgtgtattgtgactc--tat |
4946383 |
T |
|
| Q |
219 |
aaatcacttacatctctttatttctcatcttacaacaatttggaatattaa |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4946384 |
aaatcacttacatctctttatttctcatcttacaacaatttggaatattaa |
4946434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 326 - 407
Target Start/End: Original strand, 4946490 - 4946571
Alignment:
| Q |
326 |
aggtatcctatttaactcttaatctgctttttcttttagggttttctttggtcttctaacatgttagatttcaactgattaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
4946490 |
aggtatcctatttaactcttaatctgctttttcttttagggttttctttcgtcttctaacatgttagatttcaactgtttaa |
4946571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 895 times since January 2019
Visitors: 4103