View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0641_low_16 (Length: 455)

Name: NF0641_low_16
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0641_low_16
NF0641_low_16
[»] chr2 (32 HSPs)
chr2 (30-422)||(10348410-10348802)
chr2 (240-442)||(10372699-10372901)
chr2 (115-397)||(9283349-9283628)
chr2 (169-397)||(10336560-10336782)
chr2 (170-437)||(7114785-7115047)
chr2 (240-429)||(10353962-10354149)
chr2 (129-352)||(9329305-9329528)
chr2 (242-394)||(9316844-9316999)
chr2 (242-398)||(9060269-9060428)
chr2 (138-358)||(12018128-12018345)
chr2 (139-355)||(9275241-9275455)
chr2 (180-354)||(12011811-12011982)
chr2 (169-354)||(12005383-12005565)
chr2 (240-352)||(9321808-9321920)
chr2 (242-373)||(9357935-9358066)
chr2 (169-354)||(11986743-11986925)
chr2 (240-357)||(9292745-9292862)
chr2 (240-352)||(8572722-8572833)
chr2 (224-352)||(7612697-7612825)
chr2 (168-352)||(17565334-17565514)
chr2 (273-322)||(9365445-9365494)
chr2 (244-319)||(14551140-14551215)
chr2 (40-79)||(9357818-9357857)
chr2 (40-77)||(7115107-7115144)
chr2 (273-345)||(8578752-8578824)
chr2 (45-78)||(8572959-8572992)
chr2 (41-78)||(9321615-9321652)
chr2 (45-78)||(10353764-10353797)
chr2 (43-78)||(9283644-9283679)
chr2 (43-74)||(10372502-10372533)
chr2 (40-78)||(9292566-9292604)
chr2 (40-92)||(9316666-9316718)
[»] chr4 (3 HSPs)
chr4 (240-429)||(26575696-26575880)
chr4 (218-319)||(561965-562066)
chr4 (45-78)||(26575516-26575549)
[»] scaffold0667 (2 HSPs)
scaffold0667 (240-397)||(5276-5436)
scaffold0667 (47-78)||(5122-5153)
[»] chr3 (3 HSPs)
chr3 (242-373)||(37463341-37463472)
chr3 (169-354)||(39428633-39428809)
chr3 (40-78)||(37463136-37463174)
[»] chr8 (1 HSPs)
chr8 (249-397)||(41965897-41966045)
[»] chr1 (4 HSPs)
chr1 (240-337)||(29452586-29452683)
chr1 (249-337)||(29467060-29467148)
chr1 (249-373)||(29424040-29424164)
chr1 (249-373)||(29442558-29442682)
[»] chr5 (1 HSPs)
chr5 (244-354)||(36225571-36225681)


Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 30 - 422
Target Start/End: Original strand, 10348410 - 10348802
Alignment:
Q  30 attaccccagtggagatggcgaggaggccgttacatgaaccgataagagacattttactgttacggaggaggtcggtggggctccgcgtggaaggatcga 129  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348410 attacccctgtggagatggcgaggaggccgttacatgaaccgataagagacattttactgttacggaggaggtcggtggggctccgcgtggaaggatcga 10348509  T
Q  130 tgttggtggtgaagggatggttgagtggaatgatagatttggttaggtaagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggtt 229  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348510 tgttggtagtgaagggatagttgagtggaatgatagatttggttaggttagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggtt 10348609  T
Q  230 gaaatttagagaattttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgatttt 329  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348610 gaaatttagagaattttttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgatttt 10348709  T
Q  330 accggtaagcgggagaagatttcggcgagaatatccggcggaagctcagccgccattgcaaggaaggagaaggaaggttctgctagggtttag 422  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  10348710 accggtaagcgggagaagatttcggcgagaatatccggcggaagttcagccgccattccaaggaatgagaaggaaggttctgctagggtttag 10348802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 240 - 442
Target Start/End: Original strand, 10372699 - 10372901
Alignment:
Q  240 gaattttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 339  Q
    |||||||  ||||||||||||||||||||| | ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  10372699 gaattttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcggagaagtgattttaccggtaagc 10372798  T
Q  340 gggagaagatttcggcgagaatatccggcggaagctcagccgccattgcaaggaaggagaaggaaggttctgctagggtttagggttttttgtttcttac 439  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||  |||||| |    
T  10372799 gggagaagacttcggcgagaatatcaggcggaagttcagccgccattgcaaagaaggagaaggaaggttctgctagggcttagggtttttcatttcttcc 10372898  T
Q  440 ttc 442  Q
    |||    
T  10372899 ttc 10372901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 115 - 397
Target Start/End: Complemental strand, 9283628 - 9283349
Alignment:
Q  115 gcgtggaaggatcgatgttggtggtgaagggatggttgagtggaatgatagatttggttaggtaagggaaatggagttggtagaaatcggtggtgttgtg 214  Q
    ||||| |||||||||||||||||||||| ||||||||||| || || || ||||||||||||| |||||||| ||||||||||| ||   |||| |||||    
T  9283628 gcgtgaaaggatcgatgttggtggtgaaaggatggttgagcggtattatggatttggttaggttagggaaatcgagttggtagagat---tggtcttgtg 9283532  T
Q  215 acggaggatgaggttgaaatttagagaattttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaat 314  Q
    |||||||||||| ||||| || || ||| |||| ||||||||||||||||||||| | ||||| |||| ||||  ||||||||| || ||||||||||||    
T  9283531 acggaggatgagtttgaagttgagggaacttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaat 9283432  T
Q  315 cggagaagtgattttaccggtaagcgggagaagatttcggcgagaatatccggcggaagctcagccgccattgcaaggaagga 397  Q
    ||||| |||||||| || ||||||| ||||||||||||||| || || ||||||||||| || | |||||||| |||||||||    
T  9283431 cggagtagtgatttaactggtaagcaggagaagatttcggcaagtatgtccggcggaagatcggacgccattggaaggaagga 9283349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 169 - 397
Target Start/End: Original strand, 10336560 - 10336782
Alignment:
Q  169 tggttaggtaagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggttgaaatttagagaattttttaggtgaaggttgatgaattt 268  Q
    ||||||||| |||||||||||| |||||||  |||||    ||| |||||||||||||||| ||||| || |||||||  ||||||||||||||||||||    
T  10336560 tggttaggttagggaaatggaggtggtagaggtcggtt---ttgcgacggaggatgaggttaaaattgagggaattttgaaggtgaaggttgatgaattt 10336656  T
Q  269 gagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttcggcgagaatatccggc 368  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||    
T  10336657 gtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaaacgggagaagatttcggagagaatttccggc 10336756  T
Q  369 ggaagctcagccgccattgcaaggaagga 397  Q
    |||||   | ||||||||| |||||||||    
T  10336757 ggaag---atccgccattgtaaggaagga 10336782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 170 - 437
Target Start/End: Complemental strand, 7115047 - 7114785
Alignment:
Q  170 ggttaggtaagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggttgaaatttagagaattttttaggtgaaggttgatgaatttg 269  Q
    |||||||| |||||||||||||||||||| |||| || | |||||||||||||||| ||||||||| |  |||||||| || ||||||||||||||||||    
T  7115047 ggttaggttagggaaatggagttggtagagatcgttgttcttgtgacggaggatgaagttgaaattgaaggaatttttaagatgaaggttgatgaatttg 7114948  T
Q  270 agtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttcggcgagaatatccggcg 369  Q
     | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||  ||| |||| ||| |||||||||||||  || || |||||||    
T  7114947 tgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactggtaggcgagagaagatttcggatagtatttccggcg 7114848  T
Q  370 gaagctcagccgccattgcaaggaaggagaaggaaggttc-tgctagggtttagggttttttgtttctt 437  Q
    |||| ||||||||||||    ||||||||  | ||||||| | ||||||||||||||||||||||||||    
T  7114847 gaagatcagccgccatt----ggaaggag--gcaaggttcgttctagggtttagggttttttgtttctt 7114785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 240 - 429
Target Start/End: Original strand, 10353962 - 10354149
Alignment:
Q  240 gaattttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 339  Q
    |||||| | |||||||||||||||||||||   |||||||||| |||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  10353962 gaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagc 10354061  T
Q  340 gggagaagatttcggcgagaatatccggcggaagctcagccgccattgcaaggaaggagaaggaaggttctgctagggtttagggttttt 429  Q
    |||| | |||||||| |||||| ||||| ||||| ||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||    
T  10354062 gggaaaggatttcggtgagaatttccggtggaagttcagccgccattgtaaggaag--gaatgaaggttctgctagggtttagggttttt 10354149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 129 - 352
Target Start/End: Original strand, 9329305 - 9329528
Alignment:
Q  129 atgttggtggtgaagggatggttgagtggaatgatagatttggttaggtaagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggt 228  Q
    ||||||||| |||| ||||||||||||||||| || ||||||||||| | ||| | || ||||||||||| ||||||  ||   |||   ||||||||||    
T  9329305 atgttggtgctgaaaggatggttgagtggaatcatggatttggttagattaggaagatcgagttggtagagatcggtattgagctga---aggatgaggt 9329401  T
Q  229 tgaaatttagagaatttttt---aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtga 325  Q
    ||||||| || ||||| |||   |||||||||||  |||| ||| | |||||||||| |||||||||||||||||| ||||| |||||||||||||||||    
T  9329402 tgaaattgagggaattatttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtga 9329501  T
Q  326 ttttaccggtaagcgggagaagatttc 352  Q
    |||||||||||||||||||| ||||||    
T  9329502 ttttaccggtaagcgggagaggatttc 9329528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 242 - 394
Target Start/End: Original strand, 9316844 - 9316999
Alignment:
Q  242 attttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgg 341  Q
    |||||| ||||||||||||||||| ||| | ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||    
T  9316844 atttttgaggtgaaggttgatgaagttgtgagaatctattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattttactggtaagtgg 9316943  T
Q  342 gagaagatttcggcgagaatatccggcggaag---ctcagccgccattgcaaggaa 394  Q
    ||||||||||||||||| || |||||||||||    ||||||||||||| ||||||    
T  9316944 gagaagatttcggcgagtatttccggcggaagaccgtcagccgccattggaaggaa 9316999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 242 - 398
Target Start/End: Complemental strand, 9060428 - 9060269
Alignment:
Q  242 attttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgg 341  Q
    |||||| |||| ||||||  |||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  9060428 atttttgaggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcgg 9060329  T
Q  342 gagaagatttcggcgagaatatccggcggaag---ctcagccgccattgcaaggaaggag 398  Q
    |||||||||||||| || || |||||||||||    ||||||||||||| ||||||||||    
T  9060328 gagaagatttcggcaagtatttccggcggaagaacatcagccgccattggaaggaaggag 9060269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 138 - 358
Target Start/End: Complemental strand, 12018345 - 12018128
Alignment:
Q  138 gtgaagggatggttgagtggaatgatagatttggttaggtaagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggttgaaattta 237  Q
    ||||| |||||||||||||| ||||  |   ||||||||  |||||||||||||||||||| || ||||   | |||||||||||||||||||||||| |    
T  12018345 gtgaaaggatggttgagtgggatgacgg---tggttagggtagggaaatggagttggtagagatgggtg---tcgtgacggaggatgaggttgaaattga 12018252  T
Q  238 gagaa---ttttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccgg 334  Q
    | ||    ||||| || ||||| ||| |||| ||| | |||||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||| ||    
T  12018251 gggatgagtttttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactgg 12018152  T
Q  335 taagcgggagaagatttcggcgag 358  Q
    ||||||||||||||||||||||||    
T  12018151 taagcgggagaagatttcggcgag 12018128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 355
Target Start/End: Original strand, 9275241 - 9275455
Alignment:
Q  139 tgaagggatggttgagtggaatgatagatttggttaggtaagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggttgaaatttag 238  Q
    |||| |||||||||||| | || ||  |||||||||||| |||||||| ||||| |||||  | ||  ||||||||  | || |||||||||||||| ||    
T  9275241 tgaaaggatggttgagttgtattatgaatttggttaggttagggaaattgagttcgtagagtttgg--gtgttgtgttgaagaatgaggttgaaattgag 9275338  T
Q  239 agaattttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaag 338  Q
     |||||||| || |||||||||||||| ||| | ||||| || || |||||||||||||||||| |||||||||||| ||||||||||| ||| |||||     
T  9275339 ggaatttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactggtaac 9275438  T
Q  339 cgggagaagatttcggc 355  Q
    |||||||||||||||||    
T  9275439 cgggagaagatttcggc 9275455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 180 - 354
Target Start/End: Complemental strand, 12011982 - 12011811
Alignment:
Q  180 gggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggttgaaatttagagaattttttaggtgaaggttgatgaatttgagtgaatcga 279  Q
    |||||||||||||| |||| ||   |||||||||| ||||||||||||||||| ||  |||| ||||| |||||||| ||| |||| ||| | |||||||    
T  12011982 gggaaatggagttgatagagat---tggtgttgtggcggaggatgaggttgaagttgtgagagtttttgaggtgaagattggtgaagttgtgagaatcga 12011886  T
Q  280 ttaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttcgg 354  Q
    ||| |||||||||||||||||| ||||| ||||||||||||||||||| |    |||||||||||||||||||||    
T  12011885 ttatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaagatttcgg 12011811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 169 - 354
Target Start/End: Complemental strand, 12005565 - 12005383
Alignment:
Q  169 tggttaggtaagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggttgaaatttagagaattttttaggtgaaggttgatgaattt 268  Q
    ||||||| | |||||||||||| ||| ||| ||   |||| ||||| | |||||| ||||||| ||| |||||||||||||| ||||||||| |||| ||    
T  12005565 tggttagattagggaaatggaggtggaagagat---tggttttgtggccgaggataaggttgagattgagagaattttttagatgaaggttggtgaagtt 12005469  T
Q  269 gagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttcgg 354  Q
    | | |||||||||| ||||||||| |||| ||| ||||| ||||||||||||||||||| |   ||||||||||||||||||||||    
T  12005468 gtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggaggtaagcgggagaagatttcgg 12005383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 240 - 352
Target Start/End: Original strand, 9321808 - 9321920
Alignment:
Q  240 gaattttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 339  Q
    |||||||| || |||||||||||||| | | | |||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  9321808 gaatttttgagatgaaggttgatgaagtggtgagaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 9321907  T
Q  340 gggagaagatttc 352  Q
    |||||| ||||||    
T  9321908 gggagaggatttc 9321920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 242 - 373
Target Start/End: Original strand, 9357935 - 9358066
Alignment:
Q  242 attttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgg 341  Q
    |||||| ||||||||||| ||||| ||| | ||||||||||||||||||||||||||||| |||||||  || ||||||||||||||||| |||||||||    
T  9357935 atttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 9358034  T
Q  342 gagaagatttcggcgagaatatccggcggaag 373  Q
     | || |||| |||||| || |||||||||||    
T  9358035 aacaaaattttggcgagtatttccggcggaag 9358066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 169 - 354
Target Start/End: Complemental strand, 11986925 - 11986743
Alignment:
Q  169 tggttaggtaagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggttgaaatttagagaattttttaggtgaaggttgatgaattt 268  Q
    ||||||||| ||||||||||||||| |||| ||   |||||||||||||||||||||||||||| ||   ||| ||| | |||||||| ||| |||| ||    
T  11986925 tggttaggttagggaaatggagttgatagagat---tggtgttgtgacggaggatgaggttgaagttgtcagagtttctgaggtgaagattggtgaagtt 11986829  T
Q  269 gagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttcgg 354  Q
    | | ||||| |||| ||||||||| |||| ||| ||||| ||||||||||||||||||| |    |||||||||||||||||||||    
T  11986828 gtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaagatttcgg 11986743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 240 - 357
Target Start/End: Original strand, 9292745 - 9292862
Alignment:
Q  240 gaattttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 339  Q
    |||||||| |||||||||||  ||||  || | |||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||| |||| ||    
T  9292745 gaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgc 9292844  T
Q  340 gggagaagatttcggcga 357  Q
    ||||||||||||||||||    
T  9292845 gggagaagatttcggcga 9292862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 352
Target Start/End: Complemental strand, 8572833 - 8572722
Alignment:
Q  240 gaattttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 339  Q
    |||||||| |||||||||||| |||| ||| | ||||||||||  ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||    
T  8572833 gaatttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagtgattttgaagttgatcggaatcggagaagtga-tttactggtatgc 8572735  T
Q  340 gggagaagatttc 352  Q
    |||||||||||||    
T  8572734 gggagaagatttc 8572722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 352
Target Start/End: Original strand, 7612697 - 7612825
Alignment:
Q  224 gaggttgaaatttagagaattttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagt 323  Q
    |||||||||||||| ||| ||||| |||||||||||  |||| ||| | ||||| |||||||||||||| ||||| ||  |||||||||||||||| ||     
T  7612697 gaggttgaaatttaaagagtttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagg 7612796  T
Q  324 gattttaccggtaagcgggagaagatttc 352  Q
    | || |||||||||||| |||| ||||||    
T  7612797 gtttgtaccggtaagcgagagaggatttc 7612825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 168 - 352
Target Start/End: Complemental strand, 17565514 - 17565334
Alignment:
Q  168 ttggttaggtaagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggttgaaatttagagaattttttaggtgaaggttgatgaatt 267  Q
    |||||||||| ||||||||  | ||||||||| |   ||| |||||| ||||| |||||||||||||||| ||| |||||  ||||||||||| |||| |    
T  17565514 ttggttaggttagggaaatcaacttggtagaatt---tggagttgtggcggagaatgaggttgaaatttaaagagtttttg-ggtgaaggttggtgaagt 17565419  T
Q  268 tgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttc 352  Q
    |  | ||||| |||||  ||||||||||||| || |||||||||| |||||| || |||| ||| |||||||| |||| ||||||    
T  17565418 tatgggaatcaattaaaaatttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggatttc 17565334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 9365445 - 9365494
Alignment:
Q  273 gaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaag 322  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9365445 gaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 14551140 - 14551215
Alignment:
Q  244 tttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggag 319  Q
    ||||||||||||| |||||||| ||| | |||||||||| ||||| |||||||||||| |||||||||||| ||||    
T  14551140 tttttaggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaagttgatcggaattggag 14551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 9357818 - 9357857
Alignment:
Q  40 tggagatggcgaggaggccgttacatgaaccgataagaga 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9357818 tggagatggcgaggaggccgttacatgaaccgataagaga 9357857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 7115144 - 7115107
Alignment:
Q  40 tggagatggcgaggaggccgttacatgaaccgataaga 77  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7115144 tggagatggcgaggaggccgttacatgaaccgataaga 7115107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 345
Target Start/End: Complemental strand, 8578824 - 8578752
Alignment:
Q  273 gaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggaga 345  Q
    ||||| || ||||||  ||||||||| ||  ||||||||||||||||||| |||| |||||||||||||||||    
T  8578824 gaatctatgaaggatcgaagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcgggaga 8578752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 8572992 - 8572959
Alignment:
Q  45 atggcgaggaggccgttacatgaaccgataagag 78  Q
    ||||||||||||||||||||||||||||||||||    
T  8572992 atggcgaggaggccgttacatgaaccgataagag 8572959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 9321615 - 9321652
Alignment:
Q  41 ggagatggcgaggaggccgttacatgaaccgataagag 78  Q
    |||||||||||||||||||||||| |||||||||||||    
T  9321615 ggagatggcgaggaggccgttacaggaaccgataagag 9321652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 10353764 - 10353797
Alignment:
Q  45 atggcgaggaggccgttacatgaaccgataagag 78  Q
    ||||||||||||||||||||||||||||||||||    
T  10353764 atggcgaggaggccgttacatgaaccgataagag 10353797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 9283679 - 9283644
Alignment:
Q  43 agatggcgaggaggccgttacatgaaccgataagag 78  Q
    |||||||||||||||||||||||||||| |||||||    
T  9283679 agatggcgaggaggccgttacatgaaccaataagag 9283644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 74
Target Start/End: Original strand, 10372502 - 10372533
Alignment:
Q  43 agatggcgaggaggccgttacatgaaccgata 74  Q
    ||||||||||||||||||||||||||||||||    
T  10372502 agatggcgaggaggccgttacatgaaccgata 10372533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 9292566 - 9292604
Alignment:
Q  40 tggagatggcgaggaggccgttacatgaaccgataagag 78  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  9292566 tggaaatggcgaggaggccgttacatgaaccaataagag 9292604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 9316666 - 9316718
Alignment:
Q  40 tggagatggcgaggaggccgttacatgaaccgataagagacattttactgtta 92  Q
    |||| |||||||| ||||||||||||||||||| ||||| |||| | ||||||    
T  9316666 tggaaatggcgagaaggccgttacatgaaccgagaagagccattatgctgtta 9316718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 240 - 429
Target Start/End: Original strand, 26575696 - 26575880
Alignment:
Q  240 gaattttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 339  Q
    |||||| | |||||||||||||||||||||   |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| |    
T  26575696 gaatttctgaggtgaaggttgatgaatttgtaggaatcgattaagaatttaagtgattttgaagttgatcggaatcggagaagtgatattaccggtaaac 26575795  T
Q  340 gggagaagatttcggcgagaatatccggcggaagctcagccgccattgcaaggaaggagaaggaaggttctgctagggtttagggttttt 429  Q
    ||||||||||||||| |||||| ||||| ||||| ||||||||||||| |||||||  ||| |||||||   ||||||||||||||||||    
T  26575796 gggagaagatttcggtgagaatttccggtggaagttcagccgccattgtaaggaag--gaatgaaggtt---ctagggtttagggttttt 26575880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 561965 - 562066
Alignment:
Q  218 gaggatgaggttgaaatttagagaattttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcgg 317  Q
    |||||||||||| ||||| || || ||||| |||||||||||  |||| ||| | |||||||||| |||||||||  |||||||  || |||||||||||    
T  561965 gaggatgaggttaaaattgagggagtttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagccattttgaacttaatcggaatcgg 562064  T
Q  318 ag 319  Q
    ||    
T  562065 ag 562066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 26575516 - 26575549
Alignment:
Q  45 atggcgaggaggccgttacatgaaccgataagag 78  Q
    ||||||||||||||||||||||||||||||||||    
T  26575516 atggcgaggaggccgttacatgaaccgataagag 26575549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 240 - 397
Target Start/End: Original strand, 5276 - 5436
Alignment:
Q  240 gaattttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 339  Q
    ||||||||  |||||||||||||||| ||| | |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5276 gaatttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtgattttaccggtaagc 5375  T
Q  340 gggagaagatttcggcgagaatatccggcggaa---gctcagccgccattgcaaggaagga 397  Q
    ||||||||||||| |||||  | ||||||||||   | |||| |||||||| |||||||||    
T  5376 gggagaagatttctgcgagtgtgtccggcggaaggcggtcagacgccattggaaggaagga 5436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 5122 - 5153
Alignment:
Q  47 ggcgaggaggccgttacatgaaccgataagag 78  Q
    ||||||||||||||||||||||||||||||||    
T  5122 ggcgaggaggccgttacatgaaccgataagag 5153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 242 - 373
Target Start/End: Original strand, 37463341 - 37463472
Alignment:
Q  242 attttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgg 341  Q
    |||||| || |||||||||||||| ||| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||    
T  37463341 atttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgg 37463440  T
Q  342 gagaagatttcggcgagaatatccggcggaag 373  Q
    |||| |||||||||||| || |||||||||||    
T  37463441 gagaggatttcggcgagtatttccggcggaag 37463472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 169 - 354
Target Start/End: Original strand, 39428633 - 39428809
Alignment:
Q  169 tggttaggtaagggaaatggagttggtagaaatcggtggtgttgtgacggaggatgaggttgaaatttagagaattttttaggtgaaggttgatgaattt 268  Q
    ||||||||| |||||||| ||||||||||| ||   ||  |||||| || |||||||||||||| || ||  | ||||| ||||||||     |||| ||    
T  39428633 tggttaggttagggaaatcgagttggtagagat---tgcagttgtggcgaaggatgaggttgaagttgaggtagtttttgaggtgaag-----tgaagtt 39428724  T
Q  269 gagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttcgg 354  Q
    | | |||| |||||||||||||| | ||||||| |||||||||||| |||| || ||||  |||||||||||||||| ||||||||    
T  39428725 gtgggaat-gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttcgg 39428809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 37463136 - 37463174
Alignment:
Q  40 tggagatggcgaggaggccgttacatgaaccgataagag 78  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  37463136 tggagatagcgaggaggccgttacatgaaccgataagag 37463174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 249 - 397
Target Start/End: Complemental strand, 41966045 - 41965897
Alignment:
Q  249 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 348  Q
    ||||||||||||||||| ||| | |||||||||||||||  ||||||||| |||||||||||||||||||||| |||||||||||||||  |||||||||    
T  41966045 aggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggagaactgattttaccggtaatagggagaaga 41965946  T
Q  349 tttcggcgagaatatccggcggaagctcagccgccattgcaaggaagga 397  Q
    |||| ||||| || || ||||| || ||| ||| |||||  ||||||||    
T  41965945 tttcagcgagtatttctggcggtagatcaaccgtcattgtgaggaagga 41965897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 29452683 - 29452586
Alignment:
Q  240 gaattttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaa 337  Q
    |||||||  |||||||| |||||||| ||| | |||||||||| ||||| |||||||||||||||||| ||||||||||| || |||| |||||||||    
T  29452683 gaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaa 29452586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 29467148 - 29467060
Alignment:
Q  249 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaa 337  Q
    |||||||| |||||||| ||| | |||||||||| ||||| |||||||||||||||||| ||||||||||| || |||| |||||||||    
T  29467148 aggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaa 29467060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 373
Target Start/End: Original strand, 29424040 - 29424164
Alignment:
Q  249 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 348  Q
    |||||||| ||||||||  || | ||||||||||  |||| |||||||||||||||||| ||||||||||| || |||| |||||||||  | |||| ||    
T  29424040 aggtgaagcttgatgaagctgtgggaatcgattagagattgaagtgattttgaggttgaacggaatcggaggagggattgtaccggtaacagagagagga 29424139  T
Q  349 tttcggcgagaatatccggcggaag 373  Q
    || ||| ||| || |||||||||||    
T  29424140 ttccggtgagtatctccggcggaag 29424164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 373
Target Start/End: Complemental strand, 29442682 - 29442558
Alignment:
Q  249 aggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaaga 348  Q
    |||||||| |||||||| ||  | |||||||||| ||||| ||||||||| || ||||| ||||||||||| || |||| | |||||||  | |||| ||    
T  29442682 aggtgaagtttgatgaagttatgggaatcgattagggattgaagtgatttcgacgttgaacggaatcggaggagggattgtgccggtaacagagagagga 29442583  T
Q  349 tttcggcgagaatatccggcggaag 373  Q
    || |||  || || |||||||||||    
T  29442582 ttccggtaagtatctccggcggaag 29442558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 36225571 - 36225681
Alignment:
Q  244 tttttaggtgaaggttgatgaatttgagtgaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcggga 343  Q
    |||| |||||||| ||  |||| ||| | ||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||  ||  ||||||||||    
T  36225571 ttttgaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcggga 36225670  T
Q  344 gaagatttcgg 354  Q
    || ||||||||    
T  36225671 gaggatttcgg 36225681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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