View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_17 (Length: 449)
Name: NF0641_low_17
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_17 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 216 - 420
Target Start/End: Complemental strand, 132712 - 132501
Alignment:
| Q |
216 |
catttattgaaatttttaagttaatgggtctacgacgttgttacgcaattttctcaacaagtaaatgaaaacgaaaaggtctgctgcatatgtagaagta |
315 |
Q |
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||||| |||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||| |
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| T |
132712 |
catttcttgagatttttaagttaatggatctaagacgttgttacgcaattttctcaacaactaaaagaaaactaaaaggtctactgcataagtagaagta |
132613 |
T |
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| Q |
316 |
gattaaaataagaatccagattaattcttggttcaatgtaatggcaac---ttccagtaaaatatagc--gatcctaagg--ataacttaaatgtctgtt |
408 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| | ||||||||| ||||||| |||||||||| |
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| T |
132612 |
gatgaaaataagaatccagattgattcttggttcaatgtaatgccaacttgttccagtaaaatatatctatatcctaaggtaataacttcaatgtctgtt |
132513 |
T |
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| Q |
409 |
ttatgcaacatg |
420 |
Q |
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|||||||||||| |
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| T |
132512 |
ttatgcaacatg |
132501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 132873 - 132740
Alignment:
| Q |
82 |
aataacgaagtgataatatgaggaaagggacggaaaatttgcaatcctgtttcaggtatgattctcatttatgcatctatccatgaagaattgttcaatt |
181 |
Q |
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||||||||||||||||||||||| || |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
132873 |
aataacgaagtgataatatgagggaacggacagaaaatttgtaatcctgtttcaggtatgattctcttttatgcatctatccatgaagaattgttcaatt |
132774 |
T |
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| Q |
182 |
ttttctgtgtaacaattcataaaatagtcaagttcatttat |
222 |
Q |
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| T |
132773 |
ttttctgtgta-------ataaaatagtcaagttcatttat |
132740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 216 - 420
Target Start/End: Original strand, 13174276 - 13174487
Alignment:
| Q |
216 |
catttattgaaatttttaagttaatgggtctacgacgttgttacgcaattttctcaacaagtaaatgaaaacgaaaaggtctgctgcatatgtagaagta |
315 |
Q |
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| T |
13174276 |
catttcttgagatttttaagttaatggatctaagacgttgttacgcaattttctcaacaactaaaagaaaactaaaaggtctactgcataagtagaagta |
13174375 |
T |
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| Q |
316 |
gattaaaataagaatccagattaattcttggttcaatgtaatggcaac---ttccagtaaaatatagc--gatcctaagg--ataacttaaatgtctgtt |
408 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| | ||||||||| ||||||| |||||||||| |
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| T |
13174376 |
gatgaaaataagaatccagattgattcttggttcaatgtaatgccaacttgttccagtaaaatatatctatatcctaaggtaataacttcaatgtctgtt |
13174475 |
T |
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| Q |
409 |
ttatgcaacatg |
420 |
Q |
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| T |
13174476 |
ttatgcaacatg |
13174487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 13335991 - 13336114
Alignment:
| Q |
82 |
aataacgaagtgataatatgaggaaagggacggaaaatttgcaatcctgtttcaggtatgattctcatttatgcatctatccatgaagaattgttcaatt |
181 |
Q |
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| T |
13335991 |
aataacgaagtgataatatgagggaagggacggaaaatttgcaatcctgtttcaggtataattctcttttatgcatctatccatgaagaattgttcaatt |
13336090 |
T |
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| Q |
182 |
ttttctgtgtaacaattcataaaa |
205 |
Q |
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| T |
13336091 |
ttttctgtgtaacaattcataaaa |
13336114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 13174115 - 13174248
Alignment:
| Q |
82 |
aataacgaagtgataatatgaggaaagggacggaaaatttgcaatcctgtttcaggtatgattctcatttatgcatctatccatgaagaattgttcaatt |
181 |
Q |
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||||||||||||||||||||||| || |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13174115 |
aataacgaagtgataatatgagggaacggacagaaaatttgtaatcctgtttcaggtatgattctcttttatgcatctatccatgaagaattgttcaatt |
13174214 |
T |
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| Q |
182 |
ttttctgtgtaacaattcataaaatagtcaagttcatttat |
222 |
Q |
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| T |
13174215 |
ttttctgtgta-------ataaaatagtcaagttcatttat |
13174248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 420
Target Start/End: Original strand, 13337299 - 13337419
Alignment:
| Q |
307 |
gtagaagtagattaaaataagaatccagattaattcttggttcaatgtaatggcaac---ttccagtaaaatatagc--gatcctaagg--ataacttaa |
399 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| | ||||||||| ||||||| | |
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| T |
13337299 |
gtagaagtagattaaaataagaatccagattgattcttggttcaatgtaatgccaacttgttccagtaaaatatatctatatcctaaggtaataacttca |
13337398 |
T |
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| Q |
400 |
atgtctgttttatgcaacatg |
420 |
Q |
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||||||||||||||||||||| |
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| T |
13337399 |
atgtctgttttatgcaacatg |
13337419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 13347319 - 13347356
Alignment:
| Q |
179 |
attttttctgtgtaacaattcataaaatagtcaagttc |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
13347319 |
attttttctgtggaacaattcataaaatagtcaagttc |
13347356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 278
Target Start/End: Original strand, 13337272 - 13337301
Alignment:
| Q |
249 |
gacgttgttacgcaattttctcaacaagta |
278 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
13337272 |
gacgttgttacgcaattttctcaacaagta |
13337301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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