View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_18 (Length: 448)
Name: NF0641_low_18
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 53 - 405
Target Start/End: Original strand, 38074786 - 38075137
Alignment:
| Q |
53 |
aaagagataagaggataatggataacccaatcaatctaaaacccataatgtgccatgaaatgatggttagttaatgtattacccaatcaatggttgcata |
152 |
Q |
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| T |
38074786 |
aaagaggtaagaggataatggataacccaatcaatctaaaacccataatgtgccatgaaatgatggttagttaatgtattacccaatcaatggttgcata |
38074885 |
T |
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| Q |
153 |
cttaactaaaacaccgcacgccattcaaactaaaaacttaggtcaacaaacctggacatgaacacgttaagcaatgcatggttgattcgtagatgcttgt |
252 |
Q |
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| T |
38074886 |
cttaactaaaacaccgcacgccattcaaactaaaa-cttaggtcaacaaacctggacatgaacacgttaagcaatgcatggttgattcgtagatgcttgt |
38074984 |
T |
|
| Q |
253 |
attaacacataatattagaaaataaattatacagcaatgacgcttaaacagttaattgagttaatcatttgattaaaaattctagtttacgctgcctttc |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38074985 |
attaacacataatattagaaaataaattatacagcaatgacgcttaaacagttaattgagttaatcatttgattaaaagttctagtttacgctgcctttc |
38075084 |
T |
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| Q |
353 |
agcatagtttatattttctttgtttttctaactcctttcaaaaagaaggtagt |
405 |
Q |
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| T |
38075085 |
agcatggtttatattttctttgtttttctaactcctttcaaaaagaaggtagt |
38075137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 38074457 - 38074502
Alignment:
| Q |
8 |
ccaataatataagagaaacgatacaagaggatccgaataaaaaata |
53 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38074457 |
ccaataacataagagaaacgatacaagaggatccgaataaaaaata |
38074502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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