View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_19 (Length: 446)
Name: NF0641_low_19
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 6 - 419
Target Start/End: Original strand, 34161000 - 34161413
Alignment:
| Q |
6 |
agcagcacagacaattaaactaacactgcagaaacaatagagattaaaccgcccctaagaatccaaaaccccaacctcaacaagactagcattctatagg |
105 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34161000 |
agcaccacagacaattaaactaacactgcagaaacaatagagattaaaccgcccctaagaatccaaaaccccaacctcaacaagactagcattctatagg |
34161099 |
T |
|
| Q |
106 |
attccaacaccactcataatttactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctacttaataatacctaacc |
205 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34161100 |
attccaacaccactcataacttactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctactttataatacctaacc |
34161199 |
T |
|
| Q |
206 |
attagtctaatatgattagtatggggaaatacccttacctctaagtgttttccttatgtgtttttattttgtggagattctacagccaactccacgaaat |
305 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34161200 |
attagtctaatatgattagtatggggaaatacccttacctctaagtgctttccttatgtgtttttattttgtggagattctacagccaactccacgaaat |
34161299 |
T |
|
| Q |
306 |
tgggcacggtgaaatgagttgtttatgaagcttcccagaaggtgaatattcttcaaataaaagagtctattattagaacataattgaattgaaggtatgg |
405 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34161300 |
tgggcacggtgaagtgagttgtttatgaagcttcccagaaggtgaatattcttcaaataaaagagtctattattagaacataattgaattgaaattatgg |
34161399 |
T |
|
| Q |
406 |
caggaaaggtagtg |
419 |
Q |
| |
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|||||||||||||| |
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| T |
34161400 |
caggaaaggtagtg |
34161413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 31979699 - 31979504
Alignment:
| Q |
6 |
agcagcacagacaattaaactaacactgcagaaacaatagagattaaaccgcccctaagaatccaaaaccccaacctcaacaagactagcattctatagg |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
31979699 |
agcaccacagacaattaaactaacactgcagaaacaatagagattaaaccgcccctaagaatccaaaaccccaacctcaacaagactagcattctctagg |
31979600 |
T |
|
| Q |
106 |
attccaacaccactcataatttactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctacttaataatacct |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
31979599 |
attccaacaccactcataatttactaattaaatttatagttaaatttctactctctttaaacgattatgaatcataatttctactctataatacct |
31979504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 25673228 - 25673134
Alignment:
| Q |
151 |
ttcttctctctttaaacgattatgaatcacaatttctacttaataatacctaaccattagtctaatatgattagtatggggaaatacccttacct |
245 |
Q |
| |
|
||||| ||| |||||||| |||||||||| | |||||||| |||||| |||||||||||||||||||||| |||||| |||| | ||||||||| |
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|
| T |
25673228 |
ttcttttctttttaaacggttatgaatcatactttctactctataatatctaaccattagtctaatatgataagtatgaggaagtgcccttacct |
25673134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 14490591 - 14490473
Alignment:
| Q |
127 |
tactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctacttaataatacctaaccattagtctaatatgattagta |
226 |
Q |
| |
|
|||||| |||| ||||| || |||||||| ||||||||||| |||||||||| | |||||||| | |||| |||||||||||| ||||||||| |||| |
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|
| T |
14490591 |
tactaaataaaattatatttcaatttctttcctctttaaacggttatgaatcatactttctactctacaatatctaaccattagtttaatatgataagta |
14490492 |
T |
|
| Q |
227 |
tggggaaatacccttacct |
245 |
Q |
| |
|
||| ||| | ||||||||| |
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|
| T |
14490491 |
tggagaagtgcccttacct |
14490473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 43656485 - 43656365
Alignment:
| Q |
125 |
tttactaattaaatttatagttaaatttcttctctctttaaacgattatgaatcacaatttctacttaataatacctaaccattagtctaatatgattag |
224 |
Q |
| |
|
|||||||| |||| |||| || |||||||| |||||||||||| ||||| |||| | |||||||| |||||| ||||||||||| ||||||| | || |
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| T |
43656485 |
tttactaaataaaagtatatttgaatttcttttctctttaaacggttatggatcatactttctactctataatatataaccattagtttaatatgttaag |
43656386 |
T |
|
| Q |
225 |
tatggggaaatacccttacct |
245 |
Q |
| |
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||||||||| | ||||||||| |
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|
| T |
43656385 |
tatggggaagtgcccttacct |
43656365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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