View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0641_low_2 (Length: 773)

Name: NF0641_low_2
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0641_low_2
NF0641_low_2
[»] chr2 (1 HSPs)
chr2 (1-635)||(32641623-32642255)


Alignment Details
Target: chr2 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Complemental strand, 32642255 - 32641623
Alignment:
Q  1 tctctcttttctttacctattttttctcaaaaacactaacacttataagatacataccacaacacaataccaaaaatttcggt-aaacttcctctatatt 99  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  32642255 tctctcttttctttacctattttttctcaaaaacacaaacacttataagatacataacacaacacaataccaaaaatttcggttaaacttcctctatatt 32642156  T
Q  100 tggggtcacacatactcattgggattaatggcacagttacctcctaaaataccaagtaccatacctcaaaattggccatattttcctcaacaaagggtat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  32642155 tggggtcacacatactcattgggattaatggcacagttacctcctaaaataccaagtaccataccccaaaattggccatattttcctcaccaaagggtat 32642056  T
Q  200 catcatcatcatccacaatgtcaaacatcacctccaccaccacgaccacggccacgacccagaataatactcctgaccatcaaccatcaccaccatcaca 299  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  32642055 catcatcatc---cacaatgtcaaacatcacctccaccaccacgaccacggccacgacccagaataatacttctgaccatcaacaatcaccaccatcaca 32641959  T
Q  300 acaattaccatcatggatagacgaattcctcgatttttcctcggtaaggcgaggggctcacaggcggtctgccagtgactctattgccttcctcgagaca 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  32641958 acaattaccatcatggatagacgaattcctcgatttttcctcggtaaggcgaggggctcacaggcggtctgctagcgactctattgccttcctcgagaca 32641859  T
Q  400 tcatttctcgaggaagactgtaggagtggtggtggcggtggtggaggatttgatagactggatgatgaccaattaatttccatgttctctgacaatgttg 499  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32641858 tcatttctcgaggaagactgcaggagtggtggtggcggtggtggaggatttgatagactggatgatgaccaattaatttccatgttctctgacaatgttg 32641759  T
Q  500 ccggcgtatctttcccgcctttgccgttgtcatcaacatccaacccatcgtcaccatcctccgaccaaaatagcaataacaatgaagagaaaccaatggc 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32641758 ccggcgtatctttcccgcctttgccgttgtcatcaacatccaacccatcgtcaccatcctccgaccaaaatagcaataacaatgaagagaaaccaatggc 32641659  T
Q  600 aatggtgttggatgcacaacctcaagagcattatct 635  Q
    |||||||||||||| |||||||||||||||||||||    
T  32641658 aatggtgttggatgaacaacctcaagagcattatct 32641623  T

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