View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_21 (Length: 430)
Name: NF0641_low_21
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 1464929 - 1464854
Alignment:
| Q |
235 |
ttcttgttagatactaatatcttatctaagcttagatgagaaagagaaaaaaccaataaaatagcttaggtctctg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1464929 |
ttcttgttagatactaatatcttatctaagcttagatgagaaagagaaaaaaccaataaaatagcttaggtctctg |
1464854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 1465069 - 1465034
Alignment:
| Q |
98 |
cttatgttaacaacttaatcctattaattttcaata |
133 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
1465069 |
cttatgttaacaacttgatcctattaattttcaata |
1465034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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