View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_24 (Length: 390)
Name: NF0641_low_24
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_24 |
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| [»] chr8 (8 HSPs) |
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| [»] scaffold0466 (2 HSPs) |
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| [»] scaffold1041 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 6 - 390
Target Start/End: Complemental strand, 25359288 - 25358901
Alignment:
| Q |
6 |
ttttttcaagaataacaaagctat----tatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaactaccaaaa |
101 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25359288 |
ttttttcaagaataacaaagctatatattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaactaccaaaa |
25359189 |
T |
|
| Q |
102 |
taattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgnnnnnnnccacaagatgcatagagtggaagaa |
201 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||||||||||||| |
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| T |
25359188 |
taattgttggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaagatgcatagagtggaagaa |
25359089 |
T |
|
| Q |
202 |
attctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagcaagaaattcaactttgttggtt |
301 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25359088 |
attctagaatatcacacttgaggg-tcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagctagaaattcaactttgttggtt |
25358990 |
T |
|
| Q |
302 |
atcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcatcgaagaagga |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25358989 |
atcatcaaagttcaaagggaatcatgttgtcaaaaatgaacatcaacaagatataaattagtcgagatgtggtcttcatcgaagaagga |
25358901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 343
Target Start/End: Complemental strand, 25399321 - 25398988
Alignment:
| Q |
6 |
ttttttcaagaataacaaagctat----tatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaactaccaaaa |
101 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25399321 |
ttttttcaagaataacaaagctatatattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaactaccaaaa |
25399222 |
T |
|
| Q |
102 |
taattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgnnnnnnnccacaagatgcatagagtggaagaa |
201 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||||||||||||| |
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| T |
25399221 |
taattattggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaagatgcatagagtggaagaa |
25399122 |
T |
|
| Q |
202 |
attctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagcaagaaattcaactttgttggtt |
301 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25399121 |
attctagaatatcacacttga-gggtcacatatgttcatattttagacgataagaaagccaaacttgacgac-------agaaattcaactttgttggtt |
25399030 |
T |
|
| Q |
302 |
atcatcaaagttcaaagggaatcatgttgtcaaaaatgaaca |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
25399029 |
atcatcaaagttcaaagggaatcatgttgtcaaaaatgaaca |
25398988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 91 - 358
Target Start/End: Complemental strand, 25650968 - 25650704
Alignment:
| Q |
91 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgnnnnnnnccacaagatgcata |
190 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| || ||||||||||| |
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| T |
25650968 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaataccgcaagatgcata |
25650869 |
T |
|
| Q |
191 |
gagtggaagaaattctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagcaagaaattcaa |
290 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| |
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| T |
25650868 |
gagtggaagaaattctagaatatcacacttgaggg-tcgcatatgttcatattttggacgataagaaagccaaacttgacgacaag--ctagaaattcaa |
25650772 |
T |
|
| Q |
291 |
ctttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaa |
358 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
25650771 |
ctttgttggttatcatcaaagttcaaagggaatcatgttttaaaaaatgaacaacaacaagatataaa |
25650704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 91 - 332
Target Start/End: Complemental strand, 25618243 - 25618003
Alignment:
| Q |
91 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgnnnnnnnccacaagatgcata |
190 |
Q |
| |
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|||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||| |
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| T |
25618243 |
aactaccaaaataattgtgggtttaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtatgtgaaaaacaccacaagatgcata |
25618144 |
T |
|
| Q |
191 |
gagtggaagaaattctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagcaagaaattcaa |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25618143 |
gagtggaagaaattctagaatatcacacttgaggg-tcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagctagaaattcaa |
25618045 |
T |
|
| Q |
291 |
ctttgttggttatcatcaaagttcaaagggaatcatgttgtc |
332 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
25618044 |
cttttttggttatcatcaaagttctaagggaatcatgttgtc |
25618003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 281 - 390
Target Start/End: Complemental strand, 25392329 - 25392220
Alignment:
| Q |
281 |
agaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcat |
380 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25392329 |
agaaattcaactttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcat |
25392230 |
T |
|
| Q |
381 |
cgaagaagga |
390 |
Q |
| |
|
|||||||||| |
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|
| T |
25392229 |
cgaagaagga |
25392220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 25495366 - 25495282
Alignment:
| Q |
6 |
ttttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
94 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25495366 |
ttttttcaagaataacaaaggtacaatcgagagaaccagcttgcagataa----aagctatatggacgtaccgaggatatgaattaact |
25495282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 25651318 - 25651231
Alignment:
| Q |
3 |
ttattttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
94 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |
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| T |
25651318 |
ttattttttcaagaataacaaaggtactatcgagagaaccagcttgcaga----taaaagctatatggacgtaccgaagatgtgaattaact |
25651231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 25495136 - 25495057
Alignment:
| Q |
91 |
aactaccaaaataattgttga-ttgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtg |
169 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |
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| T |
25495136 |
aactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtg |
25495057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 91 - 390
Target Start/End: Original strand, 6221 - 6516
Alignment:
| Q |
91 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaattaactaatagatctccaaaaataattgtgtgnnnnnnnccacaagatgcata |
190 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||| |
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| T |
6221 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaagatgcata |
6320 |
T |
|
| Q |
191 |
gagtggaagaaattctagaatatcacacttgaggggtcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagcaagaaattcaa |
290 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6321 |
gagtggaagaaattctagattatcacacttgaggg-tcacatatgttcatattttagacgataagaaagccaaacttgacgacaagagctagaaattcaa |
6419 |
T |
|
| Q |
291 |
ctttgttggttatcatcaaagttcaaagggaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcatcgaagaagga |
390 |
Q |
| |
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| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6420 |
ccttgttggttatcatcaaagttcatagggaatcatgttgtcaaaaatg---aacaacaagatataaattagtcgagatgtggtcttcatcgaagaagga |
6516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 5996 - 6070
Alignment:
| Q |
16 |
aataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
94 |
Q |
| |
|
|||||||||| || || |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
5996 |
aataacaaaggtaaaatcgagagaaccagcttacagataa----aagctatatggacgtaccgaggatatgaattaact |
6070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 342 - 426
Alignment:
| Q |
6 |
ttttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
342 |
ttttttcaagaataacaaagctattatggagagaaccagcttgcaga----taaaagctatatggacgtaccgaggatatggattaact |
426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 542 - 604
Alignment:
| Q |
320 |
gaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcatcg |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
542 |
gaatcatgttgtcaaaaatgaacaacaacaagatataaattagtcgagatgtggtcttcatcg |
604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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