View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0641_low_25 (Length: 384)
Name: NF0641_low_25
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 32271661 - 32271454
Alignment:
| Q |
7 |
gtatcataggtgcttggattctgcattgtcacttggatgttcatattggttggggtttggctactttactattggtagaggatggagttgggaaattgca |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32271661 |
gtattataggtgcttggattctgcattgtcacttggatgttcatattggttggggtttggctactatactattggtagaggatggagttgggaaattgca |
32271562 |
T |
|
| Q |
107 |
atcaatacaatcacctccacaggacctgcctatctgttaggataattaaaaatttcatgaatttatcaagcatagtaataagggtcttaatttttattta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32271561 |
atcaatacaatcacctccacaggacctgcctatctgttaggataattaaaaatttcatgaatttatcaagcatagtaataagggtcttaatttttattta |
32271462 |
T |
|
| Q |
207 |
gttggaag |
214 |
Q |
| |
|
|||||||| |
|
|
| T |
32271461 |
gttggaag |
32271454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 32271384 - 32271312
Alignment:
| Q |
284 |
ctatttagagattaatcgg-tttagaaataaggatgtttctgttacaagctaagataccatcttaatagtcac |
355 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32271384 |
ctatttagagattaatcgggtttagaaataaggatgtttctgttacaagctaagataccatcttaatagtcac |
32271312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 35990492 - 35990353
Alignment:
| Q |
13 |
taggtgcttggattctgcattgtcacttggatgttcatattggttggggtttggctactttactattggtagaggatggagttgggaaattgcaatcaat |
112 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| ||||| ||||||||||| ||| | | |||||||||||||||| ||| |||| |||| || |
|
|
| T |
35990492 |
taggtgtttggattatgcattgtcacttggatgttcacattggatggggtttggcaactgtgtttttggtagaggatggagaagggctattggaatccat |
35990393 |
T |
|
| Q |
113 |
acaatcacctccacaggacctgcctatctgttaggataat |
152 |
Q |
| |
|
| || | ||||| ||||||||||| | |||||||||||| |
|
|
| T |
35990392 |
agaagctcctcctgaggacctgcctttgtgttaggataat |
35990353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 641 times since January 2019
Visitors: 4096