View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0641_low_3 (Length: 770)

Name: NF0641_low_3
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0641_low_3
NF0641_low_3
[»] chr2 (1 HSPs)
chr2 (1-632)||(32641623-32642255)


Alignment Details
Target: chr2 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Complemental strand, 32642255 - 32641623
Alignment:
Q  1 tctctcttttctttacctattttttctcaaaaacactaacacttataagatacataccacaacacaataccaaaaatttcggt-aaacttcctctatatt 99  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  32642255 tctctcttttctttacctattttttctcaaaaacacaaacacttataagatacataacacaacacaataccaaaaatttcggttaaacttcctctatatt 32642156  T
Q  100 tggggtcacacatactcattgggattaatggcacagttacctcctaaaataccaagtaccatacctcaaaattggccatattttcctcaacaaagggtat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  32642155 tggggtcacacatactcattgggattaatggcacagttacctcctaaaataccaagtaccataccccaaaattggccatattttcctcaccaaagggtat 32642056  T
Q  200 catcatcatccacaatgtcaaacatcacctccaccaccacgaccacggccacgacccagaataatactcctgaccatcaaccatcaccaccatcacaaca 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  32642055 catcatcatccacaatgtcaaacatcacctccaccaccacgaccacggccacgacccagaataatacttctgaccatcaacaatcaccaccatcacaaca 32641956  T
Q  300 attaccatcatggatagacgaattcctcgatttttcctcggtaaggcgaggggctcacaggcggtctgccagtgactctattgccttcctcgagacatca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  32641955 attaccatcatggatagacgaattcctcgatttttcctcggtaaggcgaggggctcacaggcggtctgctagcgactctattgccttcctcgagacatca 32641856  T
Q  400 tttctcgaggaagactgtaggagtggtggtggcggtggtggaggatttgatagactggatgatgaccaattaatttccatgttctctgacaatgttgccg 499  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32641855 tttctcgaggaagactgcaggagtggtggtggcggtggtggaggatttgatagactggatgatgaccaattaatttccatgttctctgacaatgttgccg 32641756  T
Q  500 gcgtatctttcccgcctttgccgttgtcatcaacatccaacccatcgtcaccatcctccgaccaaaatagcaataacaatgaagagaaaccaatggcaat 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32641755 gcgtatctttcccgcctttgccgttgtcatcaacatccaacccatcgtcaccatcctccgaccaaaatagcaataacaatgaagagaaaccaatggcaat 32641656  T
Q  600 ggtgttggatgcacaacctcaagagcattatct 632  Q
    ||||||||||| |||||||||||||||||||||    
T  32641655 ggtgttggatgaacaacctcaagagcattatct 32641623  T

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