View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_30 (Length: 373)
Name: NF0641_low_30
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 362
Target Start/End: Complemental strand, 17164157 - 17163824
Alignment:
| Q |
30 |
aagttggaggtagagaaataaccaatatgattgcaggattcttggctatactcttttttgtgcttgggaagaagtatgaactttgagtgatatttataaa |
129 |
Q |
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| T |
17164157 |
aagttggaggtagagaaataaccaatatgattgcaggattcttggctatactcttttttgtgcttgggaagaagtatgaactttgagtgatatttataaa |
17164058 |
T |
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| Q |
130 |
cgaaagtatagactggaaatatagacaaagatagagtaaggtcaaataaagacatcttgttttaaaaataaaagaacgagcttagttaannnnnnngatg |
229 |
Q |
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| T |
17164057 |
ctaaaggatagattggaaatatagacaaagatagagtaaggtcaaataaagacatcttattttaaaaataaaagaacgagcttaattaatttttttgatg |
17163958 |
T |
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| Q |
230 |
atctaatattataa-nnnnnnnnnnnnnggactgcctgaataaatctttaactaagcaattaataatatgaacatgtgatatttgaaaaggctattttga |
328 |
Q |
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| T |
17163957 |
atctaatattataatcttttaattttttggactgcctgaataaatctttaactaagcaattaataatatgaacatgtgatatttgaaaaggctattttga |
17163858 |
T |
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| Q |
329 |
gagtttctgactcgagataaaccatgtttttcat |
362 |
Q |
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| T |
17163857 |
gagtttcggactcgagataaaccatgtttttcat |
17163824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 17157197 - 17157015
Alignment:
| Q |
30 |
aagttggaggtagagaaataaccaa-tatgattgcaggattcttggctatactcttttttgtgcttgggaagaagtatgaactttgagtgatatttataa |
128 |
Q |
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| T |
17157197 |
aagttggatgtagagaaatagccaaataggattataggattcatggctatactcttttttgtgcttggtaagaagtatgaactttgagtgatatttataa |
17157098 |
T |
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| Q |
129 |
acgaaagtatagactgg---aaatatagacaaagatagagtaaggtcaaataaagacatcttgttttaaaaataaaagaacga |
208 |
Q |
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| T |
17157097 |
acgaaaggatggacttgtataaatgtagacaaaaatagagttaggtcaactatcgacatcttaatttaaaaatgaaaaaacga |
17157015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 17161119 - 17160934
Alignment:
| Q |
30 |
aagttggaggtagagaaataaccaa-tatgattgcaggattcttggctatactcttttttgtgcttggga--agaagtatgaactttgagtgatatttat |
126 |
Q |
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| T |
17161119 |
aagttgggggtagagaaatagccaaataggattataggattattggctatactcttttgtgtgcttggtataagaagtatgaactttaggtgatatttat |
17161020 |
T |
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| Q |
127 |
aaacgaaagtatagactg----gaaatatagacaaagatagagtaaggtcaaataaagacatcttgttttaaaaataaaagaacga |
208 |
Q |
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| T |
17161019 |
aaacaaaagggtggactgtagaaaaatgtatacaaaaatagagtaaggtcaactatcgacatcttaatttaaaaatgaaagaacga |
17160934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 17160861 - 17160776
Alignment:
| Q |
264 |
ctgaataaatctttaactaagcaattaataatatgaacatgtgatatttgaaaaggctattttgagagtttctgactcgagataaacca |
352 |
Q |
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| T |
17160861 |
ctgaataaatttttaactaaccaattaata---tgaacatgtgatatttgaaatggataatttgagagtttctgactcgagaaaaacca |
17160776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 216
Target Start/End: Original strand, 25225988 - 25226169
Alignment:
| Q |
38 |
ggtagagaaataaccaatat-gattgcaggattcttggctatactcttttttgtgcttgggaagaagtatgaactttgagtgatatttataaacgaaagt |
136 |
Q |
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|||||||||||| ||||| | |||| |||||||||||||||| |||| || ||||||| | ||||||||||||||||| ||||||||||||||| ||| |
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| T |
25225988 |
ggtagagaaatagccaatttagattacaggattcttggctatgctctattatgtgcttagtaagaagtatgaactttgggtgatatttataaacctaagg |
25226087 |
T |
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| Q |
137 |
atagac--tggaaatatagacaaagatagagtaaggtcaaataaagacatcttgttttaaaaataaaagaacgagcttagtt |
216 |
Q |
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| T |
25226088 |
gtagactgtgaaaatataaacaaaaatagaataaggtcaaatacagacagcttatttaaaaaatgaaagaacgtgcttagtt |
25226169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 25231248 - 25231326
Alignment:
| Q |
138 |
tagactggaaatatagacaaagatagagtaaggtcaaataaagacatcttgttttaaaaataaaagaacgagcttagtt |
216 |
Q |
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| T |
25231248 |
tagactggaaatatagacaaatatagagtaaggtcaaatagagacaacttatttaaaaaattaaagaacgtgcttagtt |
25231326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 25231197 - 25231234
Alignment:
| Q |
98 |
aagaagtatgaactttgagtgatatttataaacgaaag |
135 |
Q |
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| T |
25231197 |
aagaagtaggaactttgagtgatatttatacacgaaag |
25231234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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