View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_31 (Length: 369)
Name: NF0641_low_31
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 30 - 340
Target Start/End: Complemental strand, 51109493 - 51109183
Alignment:
| Q |
30 |
cactataggtgttgtaaagaattattttgctggtaaacaaagaaaagaaagtacttgtaatttcaatattgatcacaagtgaaaaagaaggttggacaca |
129 |
Q |
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| T |
51109493 |
cactataggtgttgtaaagaattattttgctcgtaaacaaagaaaagaaagtacttgtaatttcaatattgatcacaagtgaaaaagaaggttggacaca |
51109394 |
T |
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| Q |
130 |
gtcacagacgcaagccaaaaaagaaggctggaaagtggaaacattcacactcactaatgtgtatttttagaagttgcacaactaactaataaacaaacac |
229 |
Q |
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| T |
51109393 |
gtcacagacgcaagccaaaaaagaaggctggaaagtggaaacattcacactcactaatgtgtatttttagaagttgcacaactaactaataaacaaacac |
51109294 |
T |
|
| Q |
230 |
caaacctcagttacggttaattcaaccgttgaggttatgtcatttctgcatcgaatcggaaactttaggctgaataccgagaggacatttcaatttcgca |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51109293 |
caaacctcagttacggttaattcaaccgttgaggttatgtcatttctgcatcgaatctgaaactttaggctgaataccgagaggacatttcaatttcgca |
51109194 |
T |
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| Q |
330 |
gatgttacact |
340 |
Q |
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||||||||||| |
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| T |
51109193 |
gatgttacact |
51109183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 260
Target Start/End: Complemental strand, 51103850 - 51103822
Alignment:
| Q |
232 |
aacctcagttacggttaattcaaccgttg |
260 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
51103850 |
aacctcagttacggttaattcaaccgttg |
51103822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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