View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_38 (Length: 347)
Name: NF0641_low_38
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 39296565 - 39296233
Alignment:
| Q |
1 |
cttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgata |
100 |
Q |
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| T |
39296565 |
cttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacactcttgtttcttaatcatctttgaaatggttatgtgata |
39296466 |
T |
|
| Q |
101 |
ggtttttgaacgaggctcgtaacttacagttaaaagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaaca |
200 |
Q |
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| T |
39296465 |
ggtttttgaactaggctcacaacttactgttaaaagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacg |
39296366 |
T |
|
| Q |
201 |
ttgtggtgaagatgacgaataagaggaaaagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgt |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296365 |
ttgtggtgaagatgacgaataaaaggaaaagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgt |
39296266 |
T |
|
| Q |
301 |
tttcatcgttgtttttgatcgtgagaacaagag |
333 |
Q |
| |
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|||||||||||||| ||||||||||||| |||| |
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| T |
39296265 |
tttcatcgttgtttgtgatcgtgagaacgagag |
39296233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 39289685 - 39289358
Alignment:
| Q |
1 |
cttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |
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| T |
39289685 |
cttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaaccatctttaaaatggttaagtgata |
39289586 |
T |
|
| Q |
101 |
ggtttttgaacgaggctcgtaacttacagttaaaagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaaca |
200 |
Q |
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||||||||||| ||| || ||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
39289585 |
ggtttttgaactaggttcataacttatagtaagaagaatgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaaca |
39289486 |
T |
|
| Q |
201 |
ttgtggtgaagatgacgaataagaggaaaagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag--- |
297 |
Q |
| |
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|||||||| ||||| ||||||| |||||||||| ||||||| |||||||| ||| ||||| |||||||||||||| ||||| ||||| ||||||| |
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| T |
39289485 |
ttgtggtggagatgtcgaataactggaaaagctgcaagcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaat |
39289386 |
T |
|
| Q |
298 |
tgttttcatcgttgtttttgatcgtgag |
325 |
Q |
| |
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|| ||| |||||| ||||||||||||| |
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|
| T |
39289385 |
tggttttgtcgttgcttttgatcgtgag |
39289358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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