View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0641_low_39 (Length: 347)

Name: NF0641_low_39
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0641_low_39
NF0641_low_39
[»] chr1 (3 HSPs)
chr1 (96-264)||(12637171-12637339)
chr1 (100-264)||(15885621-15885788)
chr1 (100-264)||(12610079-12610246)
[»] scaffold0059 (1 HSPs)
scaffold0059 (100-264)||(62327-62494)
[»] chr6 (1 HSPs)
chr6 (127-263)||(21780017-21780153)
[»] chr3 (2 HSPs)
chr3 (127-263)||(23039245-23039381)
chr3 (127-263)||(23146124-23146260)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 96 - 264
Target Start/End: Original strand, 12637171 - 12637339
Alignment:
Q  96 aatttcacatgcttgtccacattctctaagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcattt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12637171 aatttcacatgcttgtccacattctctaagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcattt 12637270  T
Q  196 atatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcatc 264  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12637271 atatagttttcaccaacagttcctttcttgttgaatatttttctcacttcatattgtgctttcttcatc 12637339  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 100 - 264
Target Start/End: Complemental strand, 15885788 - 15885621
Alignment:
Q  100 tcacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcattta 196  Q
    |||||||||||| ||||||||||   |||||||||||||| |||||||||||||||||  ||||||||||| ||| ||||||||||   ||| ||||| |    
T  15885788 tcacatgcttgttcacattctcttggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaa 15885689  T
Q  197 tatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcatc 264  Q
    ||||||| |||||||||  ||||||  ||||||| |||| ||| ||||||| ||||||||||||||||    
T  15885688 tatagttctcaccaacaattccttttgtgttgaacatttctcttacttcatcttgtgctttcttcatc 15885621  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 264
Target Start/End: Original strand, 12610079 - 12610246
Alignment:
Q  100 tcacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcattta 196  Q
    |||||||||||||||||||||||   |||||||||||||  |||||| ||||||||||  ||||||||||| ||| |||| |||||   |||||||||||    
T  12610079 tcacatgcttgtccacattctcttggaagtaaaagaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataagtgagttcattta 12610178  T
Q  197 tatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcatc 264  Q
    || | |||||  |||||  ||||||| |||||||||| | ||| || |||| ||||||||||||||||    
T  12610179 tacaattttcttcaacatttcctttcatgttgaatatatctcttacctcatcttgtgctttcttcatc 12610246  T

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Target: scaffold0059 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 264
Target Start/End: Original strand, 62327 - 62494
Alignment:
Q  100 tcacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcattta 196  Q
    |||||||||| || |||||||||   ||||||||||| |  ||| ||||||||||| || ||||||||||| | | ||||||  |||| ||||||||  |    
T  62327 tcacatgcttctctacattctcttggaagtaaaagagcacctggggggtgtaacctcagggtctctttcacaattgacttcacgtatttgagttcatgca 62426  T
Q  197 tatagttttcaccaacagctcctttcttgttgaatatttttctcacttcatattgtgctttcttcatc 264  Q
    || |  ||||| ||| |||||| ||| ||||| |||||| ||||||||||| ||||||||||||||||    
T  62427 tacaactttcatcaaaagctcccttcatgttgtatatttctctcacttcatcttgtgctttcttcatc 62494  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 21780017 - 21780153
Alignment:
Q  127 aaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgt 226  Q
    |||||||| | ||||||||||| |||||  || ||||| || ||| | |||||||| | ||||||||| ||  | |||||| ||||   ||||||| | |    
T  21780017 aaaagaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattt 21780116  T
Q  227 tgaatatttttctcacttcatattgtgctttcttcat 263  Q
    |||| | || ||||||||||| |||||||||||||||    
T  21780117 tgaaaacttctctcacttcatcttgtgctttcttcat 21780153  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 23039245 - 23039381
Alignment:
Q  127 aaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgt 226  Q
    |||||||| ||||||||||||||||| || || ||||| || ||| |||||||||| | ||||||||| ||  | |||||| ||||   ||||||| | |    
T  23039245 aaaagaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattt 23039344  T
Q  227 tgaatatttttctcacttcatattgtgctttcttcat 263  Q
    |||| |  | |||||| |||| ||| |||||||||||    
T  23039345 tgaaaacctctctcacctcatcttgcgctttcttcat 23039381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 23146124 - 23146260
Alignment:
Q  127 aaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttatatagttttcaccaacagctcctttcttgt 226  Q
    |||||||| | ||||||||||| |||||  || ||||| || ||||| |||||||| | ||||||||| ||  | |||||| ||||   ||||||| | |    
T  23146124 aaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattt 23146223  T
Q  227 tgaatatttttctcacttcatattgtgctttcttcat 263  Q
    |||| |  | |||||| |||| |||||||||||||||    
T  23146224 tgaaaacctctctcacctcatcttgtgctttcttcat 23146260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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