View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0641_low_47 (Length: 312)

Name: NF0641_low_47
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0641_low_47
NF0641_low_47
[»] chr1 (3 HSPs)
chr1 (166-305)||(51276505-51276643)
chr1 (164-260)||(7102404-7102500)
chr1 (166-255)||(52113335-52113424)
[»] chr3 (4 HSPs)
chr3 (4-144)||(8230678-8230818)
chr3 (164-305)||(12408487-12408627)
chr3 (164-256)||(47692453-47692545)
chr3 (164-239)||(20809289-20809364)
[»] chr4 (2 HSPs)
chr4 (164-299)||(44229830-44229964)
chr4 (183-262)||(26348869-26348948)
[»] chr7 (1 HSPs)
chr7 (166-255)||(15074407-15074496)
[»] chr6 (1 HSPs)
chr6 (166-305)||(10519543-10519681)
[»] chr5 (2 HSPs)
chr5 (172-255)||(38495313-38495396)
chr5 (163-239)||(10513179-10513255)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 166 - 305
Target Start/End: Complemental strand, 51276643 - 51276505
Alignment:
Q  166 gagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttgataattcgac 265  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||  ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  51276643 gagaaatgataaatggacacacaatttgtgacacaaatacaacactatgggcaaaacggtaattttgatgtgaagtatagggttaatttggtaattcgac 51276544  T
Q  266 ttcattcttcccatttttctttgtctttctccttcatctc 305  Q
    ||||||||||||| ||||||||||||||| ||||| ||||    
T  51276543 ttcattcttccca-ttttctttgtctttccccttcttctc 51276505  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 7102404 - 7102500
Alignment:
Q  164 aagagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttgataat 260  Q
    ||||| |||||||| | | |||| |||||||||| |||| |||||||  |||||||||| |||||||||||||||| || |||| ||||||| ||||    
T  7102404 aagagtaatgataagtagacacataatttgtgacgcaaaaacaacaccatggataaaacagtaattttggtgtgaaatacagggataatttggtaat 7102500  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 52113335 - 52113424
Alignment:
Q  166 gagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttg 255  Q
    |||||||||||||| | ||||||||||  |||||| |||||||||  ||| |||||| |||||||| ||||||| || |||| |||||||    
T  52113335 gagaaatgataaatagacacacaattttagacacatatacaacaccatgggtaaaacagtaattttagtgtgaactagaggggtaatttg 52113424  T

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Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 8230818 - 8230678
Alignment:
Q  4 tgtgaattaatgaatgtatctactaatttgagtatgtaaaattgttgtgttgaaatgaagggtatagcactagttgggaaacatgggtcgttctaaaatg 103  Q
    |||||||||||||||||| |||||| |||||||| ||||||||||||| |||||||||||||| ||||| |||||| |||||||| || | ||||||| |    
T  8230818 tgtgaattaatgaatgtacctactagtttgagtacgtaaaattgttgttttgaaatgaagggtgtagcattagttgtgaaacatgagtgggtctaaaacg 8230719  T
Q  104 gtgaactacatgtatcatgtactacctactagtattaggta 144  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  8230718 gtgaactacatgtatcatgtactacctattagtatttggta 8230678  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 305
Target Start/End: Original strand, 12408487 - 12408627
Alignment:
Q  164 aagagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttgataattcg 263  Q
    |||||||||||||||||| |||||||||||  ||||||||||||||   |||  ||||| ||||||||||||||||  ||||| ||||||   ||||||     
T  12408487 aagagaaatgataaatggacacacaatttgaaacacaaatacaacatcatgggcaaaacagtaattttggtgtgaaccataggattaattgagtaattcc 12408586  T
Q  264 acttcattcttcccatttttctttgtctttctccttcatctc 305  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  12408587 acttcattcttccca-ttttctttgtctttctccttcttctc 12408627  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 47692453 - 47692545
Alignment:
Q  164 aagagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttga 256  Q
    ||||| |||||||| | | |||| ||||||||||||||| |||||||  ||| |||||| |||||||||||||||| || |||| ||||||||    
T  47692453 aagagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtaattttggtgtgaaatacagggataatttga 47692545  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 20809364 - 20809289
Alignment:
Q  164 aagagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaa 239  Q
    |||||||||||||| | | ||||||||||  ||||||||||||||||  |||| |||||  |||||||||||||||    
T  20809364 aagagaaatgataagtagacacacaattttggacacaaatacaacaccatggacaaaacaataattttggtgtgaa 20809289  T

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Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 164 - 299
Target Start/End: Complemental strand, 44229964 - 44229830
Alignment:
Q  164 aagagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttgataattcg 263  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||  |||  ||||| ||||||||||||||||  |||||||||||  | ||||||     
T  44229964 aagagaaatgataaatggacacacaatttgagacacaaatacaacaccatgggcaaaacagtaattttggtgtgaaccatagggttaatggggtaattcc 44229865  T
Q  264 acttcattcttcccatttttctttgtctttctcctt 299  Q
    ||||||||||||||| |||||| |||||||||||||    
T  44229864 acttcattcttccca-ttttctctgtctttctcctt 44229830  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 26348948 - 26348869
Alignment:
Q  183 cacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttgataattc 262  Q
    ||||||||||  ||||||||||||||||  ||| |||||| |||||||||||||||| || | || ||||||||||||||    
T  26348948 cacacaattttagacacaaatacaacaccatgggtaaaacagtaattttggtgtgaactagaagggtaatttgataattc 26348869  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 15074496 - 15074407
Alignment:
Q  166 gagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttg 255  Q
    |||||||||||||| | ||||||||||  |||||| |||||||||  |||  ||||| |||||||||||||||| || |||| |||||||    
T  15074496 gagaaatgataaatagacacacaattttagacacatatacaacaccatgggcaaaacagtaattttggtgtgaactagaggggtaatttg 15074407  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 305
Target Start/End: Original strand, 10519543 - 10519681
Alignment:
Q  166 gagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttgataattcgac 265  Q
    |||||||||||| | | |||| |||||  ||||||||||||||||  |||  ||||| || ||||||||||||| || |||| ||||||| || ||| |     
T  10519543 gagaaatgataattagacacataattttggacacaaatacaacaccatgggcaaaacagtcattttggtgtgaactagaggggtaatttggtagttccat 10519642  T
Q  266 ttcattcttcccatttttctttgtctttctccttcatctc 305  Q
    | | ||||||||  ||||||||| ||||||| ||| ||||    
T  10519643 tcccttcttccc-cttttctttgcctttctctttcttctc 10519681  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 38495313 - 38495396
Alignment:
Q  172 tgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttg 255  Q
    |||||||| | ||||||||||  |||||| |||||||||  |||  ||||| |||||||||||||||| || |||| |||||||    
T  38495313 tgataaatagacacacaattttagacacatatacaacaccatgggcaaaacagtaattttggtgtgaactagaggggtaatttg 38495396  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 10513255 - 10513179
Alignment:
Q  163 taagagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaa 239  Q
    ||||||||||||||| | | ||||| ||||  ||||||||||||||||  |||  |||||  |||||||||||||||    
T  10513255 taagagaaatgataagtagacacactattttggacacaaatacaacaccatgggcaaaacaataattttggtgtgaa 10513179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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