View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0641_low_6 (Length: 676)

Name: NF0641_low_6
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0641_low_6
NF0641_low_6
[»] chr4 (1 HSPs)
chr4 (10-647)||(53062827-53063464)


Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 10 - 647
Target Start/End: Original strand, 53062827 - 53063464
Alignment:
Q  10 aagaatatgcatcaatgttttaggaacactgacatattggacaagtaggatcttgagtcatacctcttttctctcattcaatattagaaagaatggtaac 109  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53062827 aagaatatgcatcaaagttttaggaacactgacatattggacaagtaggatcttgagtcatacctcttttctctcattcaatattagaaagaatggtaac 53062926  T
Q  110 atgagccttttctctctgttttgatttgtannnnnnnaactctaaataattaaggcatggacaaacaactttatgtcattttatatttacaacatcaaac 209  Q
    ||||||||||||||||||||||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53062927 atgagccttttctctctgttttgatttgtatttttttaactccaaataattaaggcatggacaaacaactttatgtcattttatatttacaacatcaaac 53063026  T
Q  210 ttgtcaaatatttaaactttaatcggctaactttttagatataagtcatcaaatatcatataacatgagtttaaatcagatgacaatttgaagacttttg 309  Q
    || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  53063027 ttatcaaatacttaaactttaatcagctaactttttagatataagtcatcaaatatcatataacatgagtttaaatcagatgacaatttaaaaacttttg 53063126  T
Q  310 gataatctatcaacatctatgccaataattttgagtctaaatatctatctttatttctggtgagccagtgacaccttttttaaggcatgacagtcaattt 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  53063127 gataatctatcaacatctatgccaataattttgagtctaaatatctatctttatctcaggtgagccagtgacaccttttttaaggcatgacagtcaattt 53063226  T
Q  410 gtcaacaaaaagaaagacatgaagcagcaagtttcatggaaaaagaaattgaaggagcaaagaaaatattgtatccaattcagctcccacattcacacta 509  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  53063227 gtcaacaaaaagaaagaaatgaagcagcaagtttcatggaaaaagaaattgaaggggcaaagaaaatattgtatccaattcagctcccacattcacacta 53063326  T
Q  510 gattaatatactcgtgttgttgaatacccttccaaaccaataagatacaaaaggaatctccccaatccccatttattttgtgacgaaggcttatctcttt 609  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53063327 gattagtatactcgtgttgttgaatacccttcccaaccaataagatacaaaaggaatctccccaatccccatttattttgtgacgaaggcttatctcttt 53063426  T
Q  610 tctagatccaatgcacactcttcataaacaatactctc 647  Q
    ||||||||||||||||||||||||||||||||||||||    
T  53063427 tctagatccaatgcacactcttcataaacaatactctc 53063464  T

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