View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_62 (Length: 251)
Name: NF0641_low_62
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_62 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 41414041 - 41414207
Alignment:
| Q |
13 |
agaacctgtgtttttatggtagcaattagagatacaaagattgttaaaggcaataaatgtttctgaattattgttgtttatcatacatcacgtcaatatt |
112 |
Q |
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| T |
41414041 |
agaacctgtgtttttatggtagcaattagagatacaaagattgttaaaggcaataaatgtttctgaattattgttgtttttcatacatcacgtcaatatt |
41414140 |
T |
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| Q |
113 |
aagaaatcttggttttattttcccttgtgttggcaattggcatcacgcattatcaataaactcgacc |
179 |
Q |
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| T |
41414141 |
aagaaatcttggttttattttcccttttgttggcaattggcatcacgcattatcaataaactcgacc |
41414207 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 24622660 - 24622698
Alignment:
| Q |
213 |
gaaatcagatttttagattacttgaactgaggctaatta |
251 |
Q |
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| T |
24622660 |
gaaatcagatttttagattacttgaactgaggctaatta |
24622698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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