View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_63 (Length: 251)
Name: NF0641_low_63
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 16064426 - 16064182
Alignment:
| Q |
1 |
gaaatatttatgcatatatggggaatcagacattaaattcctatcataaatgtataacagaatatacagaacatgctttacatcataagggttactccca |
100 |
Q |
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| T |
16064426 |
gaaatgtttatgcatatatggggaatcagacattaaattcctatcataaatgtataacagaatatacagaacatgctttacatcataagggttactccca |
16064327 |
T |
|
| Q |
101 |
attagtgacgacttatcatcaacacaacaatcattcggcaatattacaagaaatttgttgtaacgcaagaagtgttaaattcaaataagcttgttatcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16064326 |
attagtgacgacttatcatcaacacaacaatcattcggcaacattacaagaaatttgttgtaacgcaagaagtgttaaattcaaataagcttgttatcta |
16064227 |
T |
|
| Q |
201 |
tttgtttcttctcatactccctctcatctatttgtttcatctcac |
245 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
16064226 |
tttgtttcttctcatactctctctcatctatttgtttcttctcac |
16064182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 4024992 - 4025099
Alignment:
| Q |
46 |
ataaatgtataacagaatatacagaacatgctttacatcataagggttactcccaattagtgacgacttatcatcaacacaacaatcattcggcaatatt |
145 |
Q |
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||||||||||| | ||||||| | |||||||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||| ||||||||||| |
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| T |
4024992 |
ataaatgtatagctgaatatagataacatgctttacatcataagggttactccctattagtgacaacttgtcatcaatgtgacaatcactcggcaatatt |
4025091 |
T |
|
| Q |
146 |
acaagaaa |
153 |
Q |
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||||||| |
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| T |
4025092 |
gcaagaaa |
4025099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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