View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_64 (Length: 247)
Name: NF0641_low_64
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_64 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 27508438 - 27508204
Alignment:
| Q |
13 |
agcagagagagccaacggtctgtgatgtgccaccggagttgcaagatgatggtggtgaaggtaaccggctgtggaaggaggagcgcggtggtagtaaggc |
112 |
Q |
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| T |
27508438 |
agcagggagagccaacggtctgtgatgtgccaccggagttgcaagatgatggtggtgaaggtaaccggctgtggaaggaggagcacggtggtagtaaggc |
27508339 |
T |
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| Q |
113 |
gagaattgattgctgtggtgatggtattgcggcggtggaggtggtggctgtggccggttacatgaactaaccggttcaacatccatctctttgcggtgga |
212 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| |
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| T |
27508338 |
gagaattgattgttgtggtgatggtattgcggcggtggaggtggtggctgtggccggttacatgaactaaccgtttcaccatcgatctctttgcggtgga |
27508239 |
T |
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| Q |
213 |
aattccggtgacagttacacgcgtcccaaataaca |
247 |
Q |
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| T |
27508238 |
agttccggtgacagttacaagcggcgcaaataaca |
27508204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 35192866 - 35192926
Alignment:
| Q |
187 |
ttcaacatccatctctttgcggtggaaattccggtgacagttacacgcgtcccaaataaca |
247 |
Q |
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| T |
35192866 |
ttcaccatcgatctctttgcggtggaagttctggtgacagttacaagcggcgcaaataaca |
35192926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 44747927 - 44747987
Alignment:
| Q |
187 |
ttcaacatccatctctttgcggtggaaattccggtgacagttacacgcgtcccaaataaca |
247 |
Q |
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|||| |||| |||||||||| |||||| ||| ||||||||||||| ||| | ||||||||| |
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| T |
44747927 |
ttcaccatcgatctctttgcagtggaagttctggtgacagttacaagcggcgcaaataaca |
44747987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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